PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094412.2
Common NameMTR_4g094412
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 488aa    MW: 54712.1 Da    PI: 5.0919
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094412.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30242301159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+
  Medtr4g094412.2 242 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 301
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-32227303IPR003657WRKY domain
SuperFamilySSF1182907.85E-28235303IPR003657WRKY domain
PROSITE profilePS5081129.207237303IPR003657WRKY domain
SMARTSM007742.7E-37242302IPR003657WRKY domain
PfamPF031062.5E-27243301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGREEESKKM EIDLSLKIDS DDEQEEEVDR ELVKEDDEKE EVHEATAGEI EDDDASVIQL  60
SLQDDTKIKQ LSALEMEMES MKEENKALRK VVEQTMKDYY DLQTKFSVIQ ENNNNKRKDR  120
QLSLSLQDNN AATSGEGPSR SFHEIFSQKI QRTSSPLPPN NISEDDSISE SDLGLSLRMQ  180
TISTCQRDTE GKKEQLGSFE SVQNKMQRVH EVPSVTTTHA AYSPPNRKAR VSVRARCETA  240
TMNDGCQWRK YGQKIAKGNP CPRAYYRCTV APGCPVRKQV QRCIDDMSIL ITTYEGTHNH  300
PLPVGATAMA STASAAASFM LLDSSNPNIS DYGFTTQQSF NPYTNNSFHH PLNQSPNIRS  360
INPNDPSQGI VFDLTNNNNN ELNEQRRFST AGSSSSNIST DQPRFSWMQN KYQQQSNTSN  420
ANITMNNFHN PRVMDIHDRV WKGSEENNNN NVSAIASDPK FRLAVAAAIS SLMNKESNNT  480
TTHGSNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22229305176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094412.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968481e-109BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457266.20.0probable WRKY transcription factor 9
TrEMBLA0A072UQH00.0A0A072UQH0_MEDTR; Putative transcription factor WRKY family
STRINGXP_004504738.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-66WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]