PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094292.1
Common NameMTR_4g094292
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 378aa    MW: 40805.5 Da    PI: 9.5707
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094292.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.2e-10186212127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +k e Cr + ++G C+y ++C+FaHg+
  Medtr4g094292.1 186 FKKEVCRAWEESGNCRYNSKCQFAHGR 212
                      699**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-13182215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8184216IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7185212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159185213IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-8186212IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MKKVSKLRTS NENVSPLMVE LDDNRGLRYL QSTTVSPGFQ PYAAENFDVT GSPSQLAKYF  60
YAVSPVSAKS GDSFTSPIYG SSKYRLAKTP PYSGTSNSSG GNSSFSSRGR LSLSPLASIE  120
NLERKQLSSP RMYQTPVKGG EEVIVMDDIQ VRSMSGGKNR RSSSSSSSSG RGSSSSSSSS  180
SKSVLFKKEV CRAWEESGNC RYNSKCQFAH GREELHLSRL SMKSKSEAQM GRLSMRAGLC  240
LYGPDSRILP ESAEVAESGP VVTRLARSQP ASPEPHRTHA SLDSRIVPES AEVAEPGPAV  300
TRLARSQPTS PEPHRTPVNP NTISDWSPLD DGIEAVLPNG SDRVPSREEV DAYIFGILNQ  360
PTTKRRLPVF AALCEGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457215.20.0mRNA decay activator protein ZFP36 isoform X1
TrEMBLA0A396IAU50.0A0A396IAU5_MEDTR; Putative transcription factor C3H family
STRINGXP_004504769.11e-136(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-06C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]