PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094215.3
Common NameMTR_4g094215
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CAMTA
Protein Properties Length: 1030aa    MW: 115838 Da    PI: 6.0402
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094215.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.21.1e-51221364118
             CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                       ++rwl++ ei+ iL n++ +e+++e++trp+sgsl+L+nrk++r+fr+DGy+w+kk dgktv+E+hekLKv+g + ++cyYah+e+n++fqrr
  Medtr4g094215.3  22 AQHRWLRPAEILGILSNYQMFEISKEPPTRPPSGSLFLFNRKILRHFRRDGYNWRKKNDGKTVKEAHEKLKVEGSDKIHCYYAHGEDNENFQRR 115
                      49******************************************************************************************** PP

             CG-1  98 cywlLeeelekivlvhylevk 118
                      +yw Le ++ +iv+vhyl+vk
  Medtr4g094215.3 116 SYWRLEPDMMDIVFVHYLDVK 136
                      ******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.75715141IPR005559CG-1 DNA-binding domain
SMARTSM010767.9E-7518136IPR005559CG-1 DNA-binding domain
PfamPF038592.4E-4721135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-5439527IPR013783Immunoglobulin-like fold
CDDcd001020.00341440528No hitNo description
SuperFamilySSF812962.64E-16441526IPR014756Immunoglobulin E-set
PfamPF018338.8E-6441526IPR002909IPT domain
SuperFamilySSF484039.79E-15625734IPR020683Ankyrin repeat-containing domain
CDDcd002043.56E-11630733No hitNo description
Gene3DG3DSA:1.25.40.202.9E-15632736IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.82641749IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.179674706IPR002110Ankyrin repeat
SMARTSM0001512851873IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.297852881IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525405.04E-7853902IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.015854872IPR000048IQ motif, EF-hand binding site
SMARTSM000150.038874896IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.487875899IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4877896IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MTERSSPEMA LRLDFKQLQF EAQHRWLRPA EILGILSNYQ MFEISKEPPT RPPSGSLFLF  60
NRKILRHFRR DGYNWRKKND GKTVKEAHEK LKVEGSDKIH CYYAHGEDNE NFQRRSYWRL  120
EPDMMDIVFV HYLDVKVNKS NVGISTDTKE VTSDSQKGSS TSSGFPANYG NMRSRNMDSM  180
SPTSTLTSLC EDADSEDIHQ ASSVFRTFHE LHNPGNGPQT DKIGAHSNGP NLMHPFSGSN  240
YLPLVQGGKF NSNEGQRALD IGSWDNVMDK SSGTHTDPSP VSSYSFPSSS MSVFNEGSGS  300
QSLQSNWQNP FEENAGGFPK WSFTQSLSME FESNYSAELL GLGKETGYAS PEIDPDLFSF  360
DFEPKEQSVH QNLHTEHASM NAKESLTKVD SFSKWIKEFA SVDDLHMQSS PDISWGTDEC  420
GNVIDDTSLD LSLSQDQLFS IHDFSPKWAY ADSEIEVLII GTFVNSRPEV TTCNWSCMFG  480
EVEVPATILA NGILSCQAPP HEIGRVPFYV TFSNRFACSE VQEFEYKEGF TRNVDLADFF  540
NNSTEMRHHL HLEELLTLDS VHLSDQVLEV DMEKSNMIHK LISLKEKDEY SCNEEPTGEM  600
DISKHRLKAH IFHRQVKEKL YSWLLHKVTE TGKGPHVFGK DGQGVLHLVA ALGYDWAIAP  660
IVTSGVNINF RDVNGWTALH WAASCGRERT VALLVSMGAA AGALTDPCPA FPSGRTPADL  720
ASGDGQKGIS GFLAESLLTS HLESLTMDDV NKDGTKETLG MKAVQTISER IATPVHWGDM  780
QDAICLKDSL DAVRNATQAA DRIHQVFRMQ SFQRKQLAQY EEDGEEFGLS DQQALSLLAS  840
KASKSGHGEG SANAAAVQIQ KKFRGWTKRK EFLFIRQRVV KIQAHVRGHQ VRKKYKPIIW  900
SVGILEKVIL RWRRKGSGLR GFRSDAINKV PNQPTSLPEK EDDYDFLKEG RKQSEQKFQK  960
ALLRVKSMVQ YPEARAQYRR LLNVVDDYRQ TKTCNLSSIS SEEAADGVED LVDIQMLFND  1020
DNFVPMSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A2e-13441529991calmodulin binding transcription activator 1
2cxk_B2e-13441529991calmodulin binding transcription activator 1
2cxk_C2e-13441529991calmodulin binding transcription activator 1
2cxk_D2e-13441529991calmodulin binding transcription activator 1
2cxk_E2e-13441529991calmodulin binding transcription activator 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.252840.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094215.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457187.10.0calmodulin-binding transcription activator 2 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A072UQ840.0A0A072UQ84_MEDTR; Calmodulin-binding transcription activator 1
STRINGXP_004504800.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]