PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g093730.1
Common NameMTR_4g093730
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 335aa    MW: 37563.1 Da    PI: 4.77
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g093730.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.78.8e-15177213135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg     Tp +Rrgp g++tLCnaCGl+++ kg+
  Medtr4g093730.1 177 CQHCGIAAksTPVMRRGPAGPRTLCNACGLMWANKGT 213
                      ****955555************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.4043772IPR010399Tify domain
SMARTSM009796.7E-73772IPR010399Tify domain
PfamPF062001.2E-104170IPR010399Tify domain
PROSITE profilePS5101713.255108150IPR010402CCT domain
PfamPF062031.1E-15108149IPR010402CCT domain
PROSITE profilePS501148.748171229IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-11171224IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-12173223No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14175217IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.53E-13176219No hitNo description
PROSITE patternPS003440177204IPR000679Zinc finger, GATA-type
PfamPF003201.6E-12177213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEMLNSSENG SMAMHCTNVA YFSDEGEEPQ PITASVPLSR ASELTISFEG EVYVFPSVTP  60
EKVQAVLLLL DGKETRNSVP TSDFPVQQNC RDIWGKNDPF RNSKVSRRSA SLVRFREKRK  120
ERCFEKKIRY TCRKEVAERM QRKNGQFASL KEECSSPAEN QDFSNGSPFP ESIERRCQHC  180
GIAAKSTPVM RRGPAGPRTL CNACGLMWAN KGTLRDLGKA GRIAFEQTEL DFSTTDPENS  240
CAAQDKKESP HATKPLPMDA RQSPEMIIEQ YMLEAAEAVT DNLSIQVENN ALDLHEQDNT  300
MADFVDASGT EFEIPLCFDD QVNIDDSNMR TYWL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g093730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743391e-100AC174339.10 Medicago truncatula clone mth2-161b15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608402.10.0GATA transcription factor 24
SwissprotQ8H1G03e-60GAT28_ARATH; GATA transcription factor 28
TrEMBLG7JV510.0G7JV51_MEDTR; GATA transcription factor
STRINGAES905990.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-52ZIM-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]