PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g092700.1
Common NameMTR_4g092700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 334aa    MW: 37954.7 Da    PI: 6.1154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g092700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68e-12158204455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++ ++f  L  l+P +     +K++K+++L  A++Y+k+Lq
  Medtr4g092700.1 158 DHIIAERKRREKLSQRFIALSALVPGL-----QKMDKVTVLGDAIKYLKKLQ 204
                      6999**********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.396154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-16158218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-12159208No hitNo description
PfamPF000102.3E-9159204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-14160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMDLIDSLGI FTLTSFDFKV SFLMENISFI RGFPDQEMME DPLLLHHQWH LSSINESNSL  60
PIGSAFGDTS QHHSYVYPNF NPRTSMETAQ TLETQFVSYP NLLSFVDLNQ LNQLGLVKPK  120
DEMIGSQNNN ATSSDMISQG TFETKKVATR PKLSLPQDHI IAERKRREKL SQRFIALSAL  180
VPGLQKMDKV TVLGDAIKYL KKLQEKVKVL EEEQNMKKNV EFVVVVKKYQ LSNDVENSSA  240
ESGDPFDEEL PEIEARFCDR NVLIRVHCEK IKGVVEKTIH KIEKLNLKVT NSSFMTFGSC  300
ALDITIIAQM DVEFCMTVKD LVRNLRSVFT SFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14156219669Transcription factor MYC2
5gnj_B4e-14156219669Transcription factor MYC2
5gnj_E4e-14156219669Transcription factor MYC2
5gnj_F4e-14156219669Transcription factor MYC2
5gnj_G4e-14156219669Transcription factor MYC2
5gnj_I4e-14156219669Transcription factor MYC2
5gnj_M4e-14156219669Transcription factor MYC2
5gnj_N4e-14156219669Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167ERKRRE
2163168RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g092700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1242140.0AC124214.8 Medicago truncatula clone mth2-36a23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637316.10.0transcription factor bHLH25
RefseqXP_024637317.10.0transcription factor bHLH25
SwissprotQ9T0723e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLG7JTZ10.0G7JTZ1_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES905250.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-45bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]