PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g091490.1
Common NameMTR_4g091490
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 359aa    MW: 41018.5 Da    PI: 6.2952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g091490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
  Medtr4g091490.1 15 RGPWTQEEDQKLIDYIQKHGYGNWRLLPKNAGLQRCGKSCRLRWTNYL 62
                     89********************************************97 PP
2Myb_DNA-binding54.82.2e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Medtr4g091490.1  68 RGRFSFEEEETIIQLHSILGNK-WSSIASRLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-25765IPR009057Homeodomain-like
PROSITE profilePS5129425.691066IPR017930Myb domain
SuperFamilySSF466898.07E-3212109IPR009057Homeodomain-like
SMARTSM007174.9E-141464IPR001005SANT/Myb domain
PfamPF002496.5E-171562IPR001005SANT/Myb domain
CDDcd001676.05E-131762No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2666117IPR009057Homeodomain-like
SMARTSM007171.4E-1667115IPR001005SANT/Myb domain
PROSITE profilePS5129420.78167117IPR017930Myb domain
PfamPF002491.3E-1568112IPR001005SANT/Myb domain
CDDcd001673.15E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRAPCCEKN NGLKRGPWTQ EEDQKLIDYI QKHGYGNWRL LPKNAGLQRC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEETII QLHSILGNKW SSIASRLPGR TDNEIKNYWN THIRKRLLRM  120
GIDPVTHNPR FDLLDLSSIL NSSLYASTSS SQMNIQRLIG TQSIVNPEIL KLASSLFSSQ  180
NGQENHQIDH KQQISSHMDQ EACTMLLNPP FDNNSMSFIQ THLENIYSSF LPEFGFQQHH  240
ENVQLNYLHC NGIASSNVTE DFVHQLPCYN YLSSDYHAND LNVDPHISET STFHCNNNNQ  300
NFNFASVLST PSSSPTQLNS NSANMNESSS TEDETESYVS NNMFEFHISD ILGVNEFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32131175108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g091490.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467920.0AC146792.27 Medicago truncatula clone mth2-32m20, complete sequence.
GenBankAC1496420.0AC149642.2 Medicago truncatula chromosome 2 clone mth2-62p11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608268.10.0transcription factor MYB102
SwissprotQ9LDR81e-116MY102_ARATH; Transcription factor MYB102
TrEMBLG7JSV10.0G7JSV1_MEDTR; Myb transcription factor
STRINGAES904650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-98MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]