PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g089095.2 | ||||||||
Common Name | MTR_4g089095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 265aa MW: 29533.9 Da PI: 8.5539 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113.2 | 1.2e-35 | 12 | 69 | 2 | 59 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + ++l+cprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ Medtr4g089095.2 12 QAEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKR 69 56889**********************************************9966554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-22 | 13 | 69 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.4E-32 | 15 | 68 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.363 | 16 | 70 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 18 | 54 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MRKQQQQQSQ QQAEHLNCPR CDSTNTKFCY YNNYNKSQPR HFCRACKRHW TKGGTLRNVP 60 VGGGRKNKRI KKPTTPVTSS TTITTTSTTC TTSITNMNSN MAIQTPLQVG DHKSIPSSLY 120 QALIHPPSLL LQQNMMNNLS ENKDFGIGNG NGNVNVNGMF TSTSSTLHLP HQNQTMLFPF 180 STSSSFDTTT CSSSNVYYYG EDFKTIEEPI IPSTGCTNTK PWEIPAASTS GGMESSKYWN 240 WEDIDSLVST DLKNPYWDDS DIKP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11242 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g089095.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136829 | 0.0 | BT136829.1 Medicago truncatula clone JCVI-FLMt-15B3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457087.1 | 0.0 | dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A072UN40 | 0.0 | A0A072UN40_MEDTR; Dof domain zinc finger protein | ||||
TrEMBL | A0A072UPW6 | 0.0 | A0A072UPW6_MEDTR; Dof domain zinc finger protein | ||||
STRING | XP_004505012.1 | 1e-102 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 2e-29 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g089095.2 |
Entrez Gene | 25493206 |
Publications ? help Back to Top | |||
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