PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g089095.1
Common NameMTR_4g089095
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Dof
Protein Properties Length: 299aa    MW: 33319.2 Da    PI: 8.3885
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g089095.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.91.4e-3546103259
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                      + ++l+cprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++
  Medtr4g089095.1  46 QAEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKR 103
                      56889**********************************************9966554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2347103IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3149102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.36350104IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGLSSKQVIS SSGLDWKQTL LESQDLELPK PHHLMRKQQQ QQSQQQAEHL NCPRCDSTNT  60
KFCYYNNYNK SQPRHFCRAC KRHWTKGGTL RNVPVGGGRK NKRIKKPTTP VTSSTTITTT  120
STTCTTSITN MNSNMAIQTP LQVGDHKSIP SSLYQALIHP PSLLLQQNMM NNLSENKDFG  180
IGNGNGNVNV NGMFTSTSST LHLPHQNQTM LFPFSTSSSF DTTTCSSSNV YYYGEDFKTI  240
EEPIIPSTGC TNTKPWEIPA ASTSGGMESS KYWNWEDIDS LVSTDLKNPY WDDSDIKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.112420.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g089095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368290.0BT136829.1 Medicago truncatula clone JCVI-FLMt-15B3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457087.10.0dof zinc finger protein DOF1.4
TrEMBLA0A072UPW60.0A0A072UPW6_MEDTR; Dof domain zinc finger protein
STRINGXP_004505012.11e-122(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.23e-29Dof family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]