PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g088850.2 | ||||||||
Common Name | MTR_4g088850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LSD | ||||||||
Protein Properties | Length: 150aa MW: 16119.8 Da PI: 8.4884 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46.5 | 6.1e-15 | 45 | 69 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP+GA++V+C++C+tV Medtr4g088850.2 45 CGSCRRLLSYPPGAKHVKCSCCQTV 69 ************************9 PP | |||||||
2 | zf-LSD1 | 43.4 | 5.7e-14 | 83 | 107 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GAp VRC++C +V Medtr4g088850.2 83 CGSCAVLLMYPYGAPQVRCSSCRFV 107 **********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.3E-18 | 42 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.8E-12 | 45 | 69 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.1E-11 | 80 | 108 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.5E-11 | 83 | 107 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MMQSQHQVNK EDDDGPPPGW QPIPPPQRPR PPPPSLPSGF AQMVCGSCRR LLSYPPGAKH 60 VKCSCCQTVN IVLEADQVGQ VKCGSCAVLL MYPYGAPQVR CSSCRFVTEI GTTSGLHGLY 120 NKVNQLLPKL VVSDLSIVLL TGSSLYNKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g088850.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457043.1 | 1e-105 | protein LOL2 isoform X1 | ||||
Swissprot | O65426 | 8e-37 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A072UMQ7 | 1e-104 | A0A072UMQ7_MEDTR; LSD1-type zinc finger protein | ||||
STRING | GLYMA07G31600.1 | 1e-52 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 4e-35 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g088850.2 |
Entrez Gene | 25493167 |
Publications ? help Back to Top | |||
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