PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g088580.1

Common Name

MTR_4g088580

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Dof

Protein Properties

Length: 385aa MW: 41860.6 Da PI: 8.3318

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g088580.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.9e-39	51	110	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ Medtr4g088580.1 51 QQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRL 110 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.7E-33	53	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	55	109	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-27	56	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MFGNCVDEKT VITCNKLTQA EIDDLKVSMA SSSGGGNRVM EKPGQELLQQ QQQALRCPRC 60 DSSNTKFCYY NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRL KRPNHSSSNI 120 DTATASPSSS TPNSANSNPP SQQQQQQHHS FDIASTSNHI NSLLYGNSSC HDVMNFPFAT 180 RFNSTRVSSS SSGYDHLQQQ QPQVNGLGLG FSSGVVNLNH HDDYRNGFGS NNNNYSSIFG 240 SSSTSTNDNS MASTTPVMAS LLNSTLLQQK FMSAAGGGMK GGDPFHHEAG MMDSKEVKLG 300 EGLQNRLDQW SNNMNVPNGG VAFQNQMENM GLSDSSSLYW NNNNTNNNNN NNNNNNTAAT 360 GLSSVWNTDH QPNNIGHNSV TSLI*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MFGNCVDEKT VITCNKLTQA EIDDLKVSMA SSSGGGNRVM EKPGQELLQQ QQQALRCPRC  60
DSSNTKFCYY NNYSLSQPRH FCKACKRYWT RGGTLRNVPV GGGCRKNKRL KRPNHSSSNI  120
DTATASPSSS TPNSANSNPP SQQQQQQHHS FDIASTSNHI NSLLYGNSSC HDVMNFPFAT  180
RFNSTRVSSS SSGYDHLQQQ QPQVNGLGLG FSSGVVNLNH HDDYRNGFGS NNNNYSSIFG  240
SSSTSTNDNS MASTTPVMAS LLNSTLLQQK FMSAAGGGMK GGDPFHHEAG MMDSKEVKLG  300
EGLQNRLDQW SNNMNVPNGG VAFQNQMENM GLSDSSSLYW NNNNTNNNNN NNNNNNTAAT  360
GLSSVWNTDH QPNNIGHNSV TSLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g088580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB087849	1e-121	AB087849.1 Pisum sativum PsDof4 mRNA for DNA binding with one finger 4 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456998.1	0.0	dof zinc finger protein DOF1.4 isoform X1
TrEMBL	A0A072UML9	0.0	A0A072UML9_MEDTR; Dof-type zinc finger DNA-binding family protein
STRING	XP_004505077.1	1e-130	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	5e-35	Dof family protein

Link Out ? help Back to Top
Phytozome	Medtr4g088580.1
Entrez Gene	25493125

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]