PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088375.4
Common NameMTR_4g088375
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 1683aa    MW: 189358 Da    PI: 5.0272
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088375.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-183388257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      kR+  t+ qle+Le++++ ++yps+  r +L++klgLt+rq ++WF+ rR k+kk
  Medtr4g088375.4 33 PKRQMKTPFQLETLEKAYALDNYPSEPVRIDLSEKLGLTDRQLQMWFCHRRLKDKK 88
                     69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-17689IPR009057Homeodomain-like
SuperFamilySSF466899.84E-172489IPR009057Homeodomain-like
PROSITE profilePS5007116.6172989IPR001356Homeobox domain
SMARTSM003899.2E-193193IPR001356Homeobox domain
PfamPF000468.9E-163388IPR001356Homeobox domain
CDDcd000862.28E-143490No hitNo description
PROSITE profilePS5082716.873482541IPR018501DDT domain
SMARTSM005713.5E-22482541IPR018501DDT domain
PfamPF027912.5E-17484538IPR018501DDT domain
PfamPF050661.4E-14664732IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.8E-8864908IPR028942WHIM1 domain
PfamPF156132.7E-1410431115IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1683 aa     Download sequence    Send to blast
MEGEGSSEGE SDRKRGGADD GKIAVSTEGQ SKPKRQMKTP FQLETLEKAY ALDNYPSEPV  60
RIDLSEKLGL TDRQLQMWFC HRRLKDKKES APKKVVPPRK PVVQPLPDSP VDDHRMGFEH  120
GNEYDSGSGS GSSPGLEPRN AMALSVGYYE SPHDEMELKA IACVEDQLGE PLREDAPIIG  180
VEFDPLPPDA FGALIVTERQ KRPRLAYDGK IYGRHDVKTD KGPSKTPPIV PRNHAAQGHS  240
SRVPILSQQG KQGSPYQSPP RELATNIVSA GMNSHLIEPE NPYASPSGQI LQNNAMHIER  300
KRKGDDAKIT RDVEGHELEK HDSTRRKNEE RVRKEMERQD RERRKEEERL MRERQREEER  360
SKREEKREIE RREKYLLKEN IKAERIRQKE ELRKEKEEER RKAALEKATA RKIAKESLEL  420
IEDEQLEMME LAASSKGLSS IIRLDFDTLQ NIESFRDSLC LFPPESVKLR KPFAIQPWIN  480
SEDNVGNLLM VWRFLITFAD VLELWPFTLD EFVQAFHDYD SRLLGEIHVA LLKVIIKDIE  540
DVARTPCTGL GMNQNGAANS GGGHPEIVEG AYAWGFDIRN WHKHLNQLTW PEIFRQLALS  600
AGYGPQFKKR SITSSRANSK DEGRSSEDII STLRNGSAAQ NALTKMQERG LLGPRRSRHR  660
LTPGTVKFAA YHVLSLEDGK GLNVIELAEK IQKSGLRDLS TSKTPEASIS VALTRDAKLF  720
ERVAPSTYCV RAAFRKDPAD AESILSEARK KIQIFENGFL AEEDAEDVER EESESEVDED  780
PEVDDLVNPS TVNKTSEPCN DFSSSGKENL GHDGELKDGF DKDLPGFPDN GSKNADCPSG  840
QPVACESLIA RNLGEDNIEV DESKSGESWI QGLTEGEYSD LSVEERLNAL VVLVGLANEG  900
NLIRVVLEDR LEAANALKKQ MLAEAQIDKI RLKDDNVNKS DFPSINGIRV ETPITCAAAE  960
GNQSPLLDIN ICNNNNEESP SKAENKRLAV VGQSLSEKLP SVQDLCIGPD NPQTPLSAQY  1020
SKRSRSQLKS FISHLAEEMY IYRSLPLGQD RRHNRYWQFV ASASCNDPGS GRIFVEYHDG  1080
KWRLIDSEEA FDALLNSLDS RGIRESHLRL MLLKIENIFK ENVQKNAKCA KIGNTDEICV  1140
KNEAEETDSS PDHHTRSDSP SSTLCGLSSD TSETSASFTI ELGKSESDKK ASLRRYQDFQ  1200
KWMWKECYNP SILCAMKYGK KRCKPQVDIC DICLNLYCLE DSHCSYCHLT FPSNDGFDFS  1260
KHVIQCGDKS SKDISIFESP LPLRTRLLKA LLAFIEVSVP PEAFQSVWTE DIRRLWGVKL  1320
SRSSSAEELL QMLTLFERAL KRDFLSSPFS TTGDLLGMNA MSESAAHTSM DLESVTVLPW  1380
VPRTTSAVSL RLFELDTSIT YLQLEKPEPC EEKEARFILP SRYASVKSTK VVEPVDLDHD  1440
EFMKVKSAPL KIVQSSKKRR RLNQDKGRDK KLSKRTSHSK RDNGHHNFEV TENLSQRIKQ  1500
QGQGSQGQTG GRGPRTIRKR REEKRAVEDL SLGHKAANNS SNIGREQSRI LDEDWDDEKA  1560
SPMRPIQMEA ADMSSSSEEI EYDDNAQAVE SDDNVEAVEY GQGNWEIGFN GTPNRWNRDL  1620
VGMSEEEDVE ASEDDNDNGI EGNEEEEEGS EADVMSQGSD RMANRVVKEE SLDSSDSEDS  1680
FD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188RRLKDKKE
214571461KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.90470.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088375.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456955.10.0homeobox-DDT domain protein RLT1 isoform X5
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A072UMI70.0A0A072UMI7_MEDTR; Homeobox domain protein
STRINGGLYMA07G32180.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]