PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088080.1
Common NameMTR_4g088080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 320aa    MW: 35743.5 Da    PI: 5.3217
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-173897256
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                     r+R+ +++eq+++Le+ +++ + +p ++e++++ ++l    ++ ++ V++WFqNr+++ k
  Medtr4g088080.1 38 RPRWIPKPEQIHILEAIYNSgTTNPRRDEIKKIREQLeefgQVGDSSVFYWFQNRKYRSK 97
                     89*****************99*************************************99 PP
2Wus_type_Homeobox94.78.1e-313898363
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63
                       r+RW P+peQi+iLe++y+sG+ +P ++ei++i+++Lee+G+++d  VfyWFQNrk R++ 
    Medtr4g088080.1 38 RPRWIPKPEQIHILEAIYNSGTTNPRRDEIKKIREQLEEFGQVGDSSVFYWFQNRKYRSKT 98
                       79*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-81797IPR009057Homeodomain-like
SuperFamilySSF466898.13E-123398IPR009057Homeodomain-like
PROSITE profilePS5007110.4463499IPR001356Homeobox domain
SMARTSM003892.6E-736103IPR001356Homeobox domain
CDDcd000864.73E-837100No hitNo description
PfamPF000467.0E-153897IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAPFKKVHWS NKFKKSTNSS NSNHQNGGDD EEITPGPRPR WIPKPEQIHI LEAIYNSGTT  60
NPRRDEIKKI REQLEEFGQV GDSSVFYWFQ NRKYRSKTNK VPYNEKPGTQ QKAASNSSLP  120
QINTPPPNSS SSSSSNNIIG ISNINDGMVM VPNSPAISLN QNQDDTYPHT LTGTGLQLPT  180
PPFSSFPVEN HINKRVVLND MITPEGFNYF SGFPNMSQSL PQENVDLPLL NYDNIMNYGN  240
KNGICSINDL FDQENIQEES IHMMHMHQQD PQLNFGVTTA SSNDDHSTDL APLPPAIDMS  300
APADIPFLFT GDQFQGNKY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636461.10.0WUSCHEL-related homeobox 9
TrEMBLA0A072UMQ60.0A0A072UMQ6_MEDTR; Wuschel homeobox protein
STRINGAES781361e-108(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-28homeobox-3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]