PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g088035.1 | ||||||||
Common Name | MTR_4g088035 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 269aa MW: 30120.1 Da PI: 7.9871 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.3 | 3.9e-31 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa C+++++kC kdC+lapy+p ++++++ vhk+FG +++ k+l++l+e+ r++a++s +eA+++ +dP++G +g +++ q+++++l++ l Medtr4g088035.1 6 ACAPCRHQKKKCMKDCFLAPYYPTKKKQEYDLVHKVFGYKKLEKMLRNLDEQGRKKAIESFDWEAKMWKQDPINGPLGAFTEAQNEIARLQNLL 99 7******************************************************************************************999 PP DUF260 95 allkee 100 ++++++ Medtr4g088035.1 100 QQQQDQ 105 988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.798 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-28 | 6 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MINKTACAPC RHQKKKCMKD CFLAPYYPTK KKQEYDLVHK VFGYKKLEKM LRNLDEQGRK 60 KAIESFDWEA KMWKQDPING PLGAFTEAQN EIARLQNLLQ QQQDQTVPSS DPKFMGLAQN 120 SFSYNSDAVP VSSNGNWSSF EAPFVANNNV VHNPYFEYPY GGNSFGSIGA LQNEETNLLN 180 CVVAGPNVWQ PSQPNYLQSL ASSSGTKVTV DHNIITNQHM GMQGEGQQHS KYYSFGNCKE 240 FFSLLLSLVG IDICAPFSLA SFLLNIKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-18 | 7 | 105 | 12 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-18 | 7 | 105 | 12 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g088035.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456911.1 | 0.0 | LOB domain-containing protein 2 | ||||
TrEMBL | A0A072UMQ1 | 0.0 | A0A072UMQ1_MEDTR; LOB domain protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14786 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 3e-23 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g088035.1 |
Entrez Gene | 25493051 |
Publications ? help Back to Top | |||
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