PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088005.1
Common NameMTR_4g088005
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 123aa    MW: 13976.8 Da    PI: 10.1573
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088005.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-2056107256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+++AeIrd ++ng  +r++lg+f taeeAa a+++a+ +++g+
  Medtr4g088005.1  56 NYRGVRRRP-WGKYAAEIRDSKQNG--ARIWLGTFQTAEEAAIAYDKAAFRMRGA 107
                      59*******.**********76787..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.79E-3255116No hitNo description
SuperFamilySSF541711.18E-2356116IPR016177DNA-binding domain
PROSITE profilePS5103223.34156114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3256115IPR001471AP2/ERF domain
SMARTSM003808.1E-3856120IPR001471AP2/ERF domain
PfamPF008471.4E-1356106IPR001471AP2/ERF domain
PRINTSPR003672.1E-115768IPR001471AP2/ERF domain
PRINTSPR003672.1E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MALNFISQSE LPLNENDSQD MVIYQILKEA NELSNTMVQE RHQNGLEQSK SIKKKNYRGV  60
RRRPWGKYAA EIRDSKQNGA RIWLGTFQTA EEAAIAYDKA AFRMRGAKAL LNFPHDFSAQ  120
GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3253114263ATERF1
3gcc_A4e-3253114263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456908.14e-87pathogenesis-related genes transcriptional activator PTI5
SwissprotO046816e-50PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A072UMF19e-86A0A072UMF1_MEDTR; Ethylene response factor
STRINGXP_004485859.19e-58(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.18e-33ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]