PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g087300.1
Common NameMTR_4g087300
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 166aa    MW: 18106.6 Da    PI: 8.3184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g087300.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.5e-0556951054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     + R ++i +++  L++l+ +      +K + +++L++A++YI  L
  Medtr4g087300.1 56 KDRKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMDYIGFL 95
                     67889999**********999.....9***************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3574695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-852106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00352101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1153110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-556100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MIASSFCNAD SMFSSEEGID VRKMMGHKRS PCSVDQSNYN SIASKKQKPD LSISTKDRKE  60
KIGERIVALQ QLVSPYGKTD TSSVLKEAMD YIGFLHKQVK LLSAPYLETA PATQLQDTES  120
CSLRSRGLCI VPVSFTNGVA EGNGADIWAP IKTTSPKHEK DVSQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g087300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310981e-162KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608064.11e-121transcription factor bHLH153 isoform X1
SwissprotQ7XJU26e-52BH153_ARATH; Transcription factor bHLH153
TrEMBLG7JNL31e-120G7JNL3_MEDTR; BHLH transcription factor-like protein
STRINGAES902611e-120(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-54bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]