PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g086835.1 | ||||||||
Common Name | MTR_4g086835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 418aa MW: 46524.9 Da PI: 8.489 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.8 | 2.1e-32 | 274 | 329 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Medtr4g086835.1 274 KQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 329 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-29 | 271 | 332 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.14E-18 | 271 | 332 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.664 | 271 | 331 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.4E-27 | 274 | 329 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.2E-8 | 276 | 327 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MGCVVPAELS LDLRPTFVPK TIANFLFHLS TIQTTSDKLS KLHDFLSRLE DELNKIDAFK 60 RELPLSMLLL NDAILVLKEE LEKCTSKNSV PVLEEFIPLK KEIDQSEENK NNDRDKNNNN 120 ECSKDKKNWM SSVQLWNNNT TTSNNNVSDH HHHHKLNKLE TTKKREEGQS VTVAEDLFQS 180 CSSNRNGGSA FMPFSAYSSV PVTTVTLSAP KEEKEEPVRN RLSFLTPEVK SLREGFGSRG 240 SRSSSNRAVS SSSPPTVQPS LRAAPLQPQQ TSRKQRRCWS PELHRRFVNA LQKLGGSQAA 300 TPKQIRELMQ VDGLTNDEVK SHLQKYRLHT RRVPAASGTD QSVVVLGGLW MPQEHYNDSS 360 KGSSTASGSP QSPLHLATGS RGGTSPTEGD SMEDDDDEKS ESYSWKSHIH RHGKVGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 274 | 327 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 274 | 327 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-13 | 274 | 327 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-13 | 274 | 327 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-13 | 274 | 327 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-13 | 274 | 327 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 274 | 327 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 274 | 327 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 274 | 327 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 274 | 327 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 274 | 327 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 274 | 327 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7940 | 0.0 | leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g086835.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456887.1 | 0.0 | myb family transcription factor EFM isoform X1 | ||||
TrEMBL | A0A072UPI8 | 0.0 | A0A072UPI8_MEDTR; Myb-like transcription factor family protein | ||||
STRING | AES90234 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 3e-46 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g086835.1 |
Entrez Gene | 25493035 |
Publications ? help Back to Top | |||
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