PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g086160.1 | ||||||||
Common Name | MTR_4g086160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25906.9 Da PI: 6.142 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.5 | 5.1e-21 | 94 | 144 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp+ r r++lg+f taeeAa+a+++a+ +++g Medtr4g086160.1 94 KKYRGVRQRP-WGKWAAEIRDPR----RaVRVWLGTFTTAEEAARAYDNAAIEFRG 144 59********.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-14 | 95 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.15E-23 | 95 | 153 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-33 | 95 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-39 | 95 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.356 | 95 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-12 | 96 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.98E-35 | 96 | 152 | No hit | No description |
PRINTS | PR00367 | 5.7E-12 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MNNSSSSFSS STLPSDQEQS VIVTALTKVV SGSTSTANSL PEFHLPDSTI GSSSSMERIP 60 PTNMETCREC NIAGCLGCNF FSQENKKKQI RAKKKYRGVR QRPWGKWAAE IRDPRRAVRV 120 WLGTFTTAEE AARAYDNAAI EFRGPRAKLN FPLVDESLKH VEEPEVIVHS KHVTKDENMN 180 QEMQIETMTG FENNKDCDFL DSIGEPDFQQ FMKFMEFSGD SSGSRTGNPF N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-25 | 94 | 153 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.24257 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g086160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC148348 | 0.0 | AC148348.6 Medicago truncatula clone mth2-28b4, complete sequence. | |||
GenBank | AC225538 | 0.0 | AC225538.2 Medicago truncatula clone mth2-68m14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607977.2 | 1e-174 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 2e-35 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | G7JL87 | 1e-173 | G7JL87_MEDTR; AP2/ERF domain transcription factor | ||||
STRING | AES90174 | 1e-148 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34410.1 | 6e-33 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g086160.1 |
Entrez Gene | 11444521 |