PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g082290.1
Common NameMTR_4g082290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 408aa    MW: 46075.5 Da    PI: 6.0956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g082290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  Medtr4g082290.1 14 KGPWTAEEDQKLIAYIEEFGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.93.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l
  Medtr4g082290.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAQLP-RRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.075961IPR017930Myb domain
SuperFamilySSF466896.36E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001676.29E-111661No hitNo description
PROSITE profilePS5129425.55762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-2665116IPR009057Homeodomain-like
SMARTSM007178.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.9E-1567112IPR001005SANT/Myb domain
CDDcd001678.61E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTAE EDQKLIAYIE EFGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAQLPRRT DNEIKNYWNT HLKKRLTRMG  120
IDPTTHKPKQ DHSPGSSTSQ YTKDSANLSH MAQWESARLE AEARLVRETN KLKVQRQLEF  180
ESSKPQPPAR LFLNKITPLI QPSLPPCLDI LKAWQSSWSK PTTKDDSNNN NNKMHSMYAM  240
MLSNDDLESP TSTLNFPGTT LLPLPLSVPM TNNNIEPFNQ SLLPLTNSTN NDDDDDDDDN  300
EIWKQFNLTK HNTEGGHGHD NNNTMLNFQQ DDDIMAAVEA FRASGGFDNN INTPPISTNV  360
LQVLEGGDHQ ENLDGSMICN VNLEENKHYW NSILGLVNES DDMNSIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.6920.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g082290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1442560.0BT144256.1 Medicago truncatula clone JCVI-FLMt-18M16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456756.10.0transcription factor MYB106
TrEMBLA0A072UM630.0A0A072UM63_MEDTR; Myb transcription factor mixta-like protein
STRINGAES899550.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.21e-100myb domain protein 16
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]