PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g082230.1 | ||||||||
Common Name | MTR_4g082230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 408aa MW: 46280.8 Da PI: 6.4488 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k++G g+W++ +++ g+ R++k+c++rw +yl Medtr4g082230.1 14 KGPWTPEEDQQLIAYIKEFGHGSWHALPAKAGLPRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.7e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l Medtr4g082230.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAQLP-RRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.536 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.97E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.557 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.96E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGRSPCCEKV RLKKGPWTPE EDQQLIAYIK EFGHGSWHAL PAKAGLPRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAQLPRRT DNEIKNYWNT HLKKRLTRMG 120 IDPTTHKPKQ DHSPGSSTSQ YTKDSANLSH MAQWESARLE AEARLVRETN KLKVQRQLEF 180 ESSKPQPPAR LFLNKITPLI QPSLPPCLDI LKAWQSSWSK PTTKDDSNNN NNKMHSMYAM 240 MLSNDDLESP TSTLNFPGTT LLPLPLSVPM TNNNIEPFNQ SLLPFTNSTN NDDDDYDDDY 300 EIWKQFNLTK HNTEGGHGHD NNNTMLNFQQ DDDIMAAVEA FRASGGFDNN INTPPISTNV 360 LQVLEGGDHQ ENLDGSMICN VNLEENKHYW NSILGLVNES DDMNSIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.692 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g082230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT144256 | 0.0 | BT144256.1 Medicago truncatula clone JCVI-FLMt-18M16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607758.2 | 0.0 | transcription factor MYB106 | ||||
Swissprot | Q9LE63 | 6e-96 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | G7JGA6 | 0.0 | G7JGA6_MEDTR; Myb transcription factor mixta-like protein | ||||
STRING | AES89955 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF835 | 34 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 4e-97 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g082230.1 |
Entrez Gene | 11444647 |
Publications ? help Back to Top | |||
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