PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g082060.1
Common NameMTR_4g082060
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Dof
Protein Properties Length: 466aa    MW: 50578.4 Da    PI: 7.3968
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g082060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.95.2e-39118177261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Medtr4g082060.1 118 PDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNL 177
                      7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-30115175IPR003851Zinc finger, Dof-type
PfamPF027011.0E-31120176IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.481122176IPR003851Zinc finger, Dof-type
PROSITE patternPS013610124160IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSEVKDPAIK LFGRTIPLLP LIIPANDSSF PSSSPPEFTS AIQHETEEPS RKELITAQDD  60
EASQKTTEDL RALTTSSVVH ENPPKTPSAE TENSLLKSST NVEQSETSVS EEKTLKKPDK  120
IIPCPRCNSM DTKFCYFNNY NVNQPRHFCK KCQRYWTAGG TMRNVPVGAG RRKNKNLSTS  180
HYRHLIIPEG AKLNSPNGIH SLGNGAAVLT FDSNPPLCNT MASVLNIAER TQNCVSNGFH  240
HASSYGGEND HSIGVSVTAS NSSERKSHTS TNGLVDKGVE GFPPQLQHIP SPFLPYTWNS  300
AMPPPTFCPP NYPLAFYTPV TPPAYWGCMP PPWNIPCISP GSASVNESDS AHSSVPTLGK  360
HSRDGNIITS VNSPKEKPET EHNSTESSVL IPKTLRFDDP SEAAKSSLWS KLGINNDKAN  420
SLNGGGMFNG FQSKGKDMNH SVGTSPLMYA NPAALSRSRT FHEET*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.95830.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g082060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400300.0AC140030.6 Medicago truncatula clone mth2-7g24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607748.10.0cyclic dof factor 1
TrEMBLG7JG960.0G7JG96_MEDTR; DOF-type zinc finger DNA-binding family protein
STRINGAES899450.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.13e-86cycling DOF factor 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]