PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g082040.1
Common NameMTR_4g082040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 428aa    MW: 47975.9 Da    PI: 5.4653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g082040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-16105150147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Medtr4g082040.1 105 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 150
                      899*****************************.***********996 PP
2Myb_DNA-binding54.42.9e-17157200146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r +++ eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Medtr4g082040.1 157 RRAFSDEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 200
                      6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17100151IPR017930Myb domain
SMARTSM007172.9E-14104153IPR001005SANT/Myb domain
PfamPF002498.8E-16105150IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-27105198IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-25106158IPR009057Homeodomain-like
CDDcd001673.13E-13108149No hitNo description
PROSITE profilePS5129426.536152206IPR017930Myb domain
SMARTSM007174.9E-14156204IPR001005SANT/Myb domain
PfamPF002498.6E-14157199IPR001005SANT/Myb domain
CDDcd001672.55E-11159199No hitNo description
Gene3DG3DSA:1.10.10.602.9E-20159205IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGMVYANMES LSLNYAASSS SQDCYISKEG ATTNWSLPFM RECYIERNFE ENNNSDDGGE  60
GDGSDSGGDV GENSEKINLN EDNPNENSYV SGKEVDTGHS KLCARGHWRP AEDSKLKELV  120
ALYGPQNWNL IAEKLEGRSG KSCRLRWFNQ LDPRINRRAF SDEEEERLMQ AHRIYGNKWA  180
MIARLFPGRT DNAVKNHWHV IMARKYREQS SAYRRRRLNQ SVYRRMEENT SFVSRDIVTA  240
TGMEPVPPPP YYINLPNGTL GYNMASFPYS TFHGVVDGGV ECGLNGSTHL TSSKEAISSD  300
KQAPTPIGLF AQQSPLDFFS GGRRNEYYSQ MRSWDRPSDL HENQPTPTPS GFYHEYPQYM  360
MPMQQQNNNF YSFTSNISTT AATTLGSEVS LSSVAAAAEN HRDQVLMSNP PPSDAIPFID  420
FLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-331052057107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212217YRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g082040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400300.0AC140030.6 Medicago truncatula clone mth2-7g24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607746.20.0transcription factor CSA
TrEMBLG7JG940.0G7JG94_MEDTR; Myb transcription factor
STRINGAES899430.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-77myb domain protein 105
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]