PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g081710.1

Common Name

MTR_4g081710

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

G2-like

Protein Properties

Length: 340aa MW: 37889.4 Da PI: 6.2706

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g081710.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.5e-31	17	71	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rF +a++qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl Medtr4g081710.1 17 KPRLKWTHELHQRFTDAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-29	15	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-15	16	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.5E-22	17	72	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-7	19	70	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-21	114	159	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDQQNQSMRL VLSTDAKPRL KWTHELHQRF TDAINQLGGA EKATPKSLMR VMGIPGLTLY 60 HLKSHLQKYR LGKSQLVETC SDNKQDYIEI QNSDGQCSRE ISVGNQNQTT ESLKIAEALE 120 VQMEVQKKLY EQIEVQKHLQ FRIEAQGKYL QSVLMKAQEA LAGYSSSSST TGVEHAKAEL 180 SQLLSIINNA CPSSPLSELT ETRGFSLNFG ERKQNRGTMC SLESSLTSSE SSERKEEKQT 240 INEAENTPNY NSISVELPLM AIESEGRTFR TNANDGGSGR KRSATIDLDG RCVDQPDGKI 300 CGKKPRKSEF SQMLDLNSKY ERDIDSSSLE IDLNCSSSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-19	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-19	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-19	17	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-19	17	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-19	17	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-19	17	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-19	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-19	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-19	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-19	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-19	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-19	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.23936	0.0	root\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g081710.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003607716.2	0.0	myb family transcription factor PHL8 isoform X1
Swissprot	F4I274	6e-81	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	G7JF47	0.0	G7JF47_MEDTR; Myb-like transcription factor family protein
STRING	AES89913	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	7e-81	G2-like family protein

Link Out ? help Back to Top
Phytozome	Medtr4g081710.1
Entrez Gene	11446293

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]