PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g079960.3
Common NameMTR_4g079960
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 316aa    MW: 35784.6 Da    PI: 10.3136
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g079960.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.71.1e-1630121186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt++ + +Li+a  e+  +l+rg+l+++ W+ev++++        r+ +r+ +qCk++++ l+k+yk +k++ ++   + +s +p+f++l+
  Medtr4g079960.3  30 CWTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVndfhaaGNRKARRTDVQCKNRIDTLKKKYKIEKARVSESDGGYQSPWPFFTRLD 121
                      8*****************************************99999**************************9999999999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-2628122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDIIAGAPSP IHSVPPRLPL SSPYSGREDC WTEDATSTLI DAWGERYLDL NRGNLRQKTW  60
QEVADAVNDF HAAGNRKARR TDVQCKNRID TLKKKYKIEK ARVSESDGGY QSPWPFFTRL  120
DVLIGDTFPV KKLSSPVNVR STPTVVKRPP PQSPPSPPSP PAWIISHPVG PRSGTQKRPA  180
MVKRDEVSFR RNFSAFAAAA AAAAEAESVE SEEWRSSTGK KGRENDGTHK EFGFRELAQA  240
IERFSEVYER VEASKQRQMV ELEKQRMQFV KDLEYQRMQL YMETQVQLQK IKRTKRASGS  300
GKNWLVLKQL LLYPP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g079960.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742940.0AC174294.14 Medicago truncatula clone mth2-71d8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456697.10.0trihelix transcription factor ASIL2 isoform X1
TrEMBLA0A072UNW30.0A0A072UNW3_MEDTR; Sequence-specific DNA-binding transcription factors protein, putative
STRINGAES897850.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.19e-73sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]