PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g079960.2 | ||||||||
Common Name | MTR_4g079960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Trihelix | ||||||||
Protein Properties | Length: 305aa MW: 34456.9 Da PI: 10.1683 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 52.8 | 1e-16 | 30 | 121 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ + +Li+a e+ +l+rg+l+++ W+ev++++ r+ +r+ +qCk++++ l+k+yk +k++ ++ + +s +p+f++l+ Medtr4g079960.2 30 CWTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVndfhaaGNRKARRTDVQCKNRIDTLKKKYKIEKARVSESDGGYQSPWPFFTRLD 121 8*****************************************99999**************************9999999999******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.1E-26 | 28 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MDIIAGAPSP IHSVPPRLPL SSPYSGREDC WTEDATSTLI DAWGERYLDL NRGNLRQKTW 60 QEVADAVNDF HAAGNRKARR TDVQCKNRID TLKKKYKIEK ARVSESDGGY QSPWPFFTRL 120 DVLIGDTFPV KKLSSPVNVR STPTVVKRPP PQSPPSPPSP PAWIISHPVG PRSGTQKRPA 180 MVKRDEVSFR RNFSAFAAAA AAAAEAESVE SEEWRSSTGK KGRENDGTHK EFGFRELAQA 240 IERFSEVYER VEASKQRQMV ELEKQRMQFV KDLEYQRMQL YMETQVQLQK IKRTKRASGS 300 DSFS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g079960.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174294 | 0.0 | AC174294.14 Medicago truncatula clone mth2-71d8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456696.1 | 0.0 | trihelix transcription factor ASIL2 isoform X3 | ||||
TrEMBL | A0A072ULZ4 | 0.0 | A0A072ULZ4_MEDTR; Sequence-specific DNA-binding transcription factors protein, putative | ||||
STRING | AES89785 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 4e-73 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g079960.2 |
Entrez Gene | 11417768 |
Publications ? help Back to Top | |||
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