PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g079580.1 | ||||||||
Common Name | MTR_096s0002, MTR_4g079580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 336aa MW: 37656 Da PI: 6.5092 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.8 | 8e-34 | 19 | 142 | 1 | 111 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.eaesssssasnss 86 a+gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ + +++ ++ ++++++ ++s Medtr4g079580.1 19 ATGKKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwhpisE----NQTlKPLEEVQNVVANS 108 589**************************************************************88753330....33344444444444444 PP TCP 87 sg.........kaaksaakskksqksaasalnla 111 sg + +++ ++ s+++ ++++++ Medtr4g079580.1 109 SGmvvgetsesNGYSFHLLRQLSENQGNHNSAFI 142 4445555555444444444444444444444333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-30 | 20 | 166 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.91 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MRSTGGEIVQ VEGGHIVRAT GKKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD 60 RPSKAVDWLI KKAKSSIDKL AELPPWHPIS ENQTLKPLEE VQNVVANSSG MVVGETSESN 120 GYSFHLLRQL SENQGNHNSA FISPHNVETD PIPFFPTTSS TSSSINFQNY PSENLGLSLH 180 SFQDHNGFIP WQSQQVCENH ETSNENQNQN QTFFENQYHR IENWNNETTN DYIKKVGFMV 240 NSQSFLGQGS GSEYSPNETL QSNFSHSVRT WNEIPMDSSS EVHHHRSQQV HQASIFGSRF 300 VSDGLAGFCI PDTVQGGEEG HRVSSNRPSS SPNHN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g079580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144893 | 0.0 | AC144893.15 Medicago truncatula clone mth2-29d23, complete sequence. | |||
GenBank | AC171619 | 0.0 | AC171619.9 Medicago truncatula clone mth2-160a1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607555.1 | 0.0 | transcription factor TCP10 | ||||
TrEMBL | G7ZZY9 | 0.0 | G7ZZY9_MEDTR; Putative transcription factor TCP family | ||||
STRING | AES84777 | 0.0 | (Medicago truncatula) | ||||
STRING | AES89752 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 7e-48 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g079580.1 |
Entrez Gene | 11414122 |
Publications ? help Back to Top | |||
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