PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g078875.1
Common NameMTR_4g078875
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 285aa    MW: 31986 Da    PI: 9.2515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g078875.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.8e-33481891128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....... 79 
                      lp+G++F+Ptd+e++ e+L++k++++ ++l+        +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++       
  Medtr4g078875.1  48 LPAGVKFDPTDQEIL-EHLEAKAKSDIHKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHsdhedgs 139
                      799***********9.99****999884443233332222333336**********.555555677******************8444455444 PP

              NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      + +W++tgk+++v++ +++l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Medtr4g078875.1 140 ETRWHKTGKTRPVYN-NSKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 189
                      778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3644208IPR003441NAC domain
PROSITE profilePS5100532.18248208IPR003441NAC domain
PfamPF023652.5E-1549189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTQCSDPQNN VVITVDGRKD SLIRTCLTCG HHIKGQDQGG GINDLPGLPA GVKFDPTDQE  60
ILEHLEAKAK SDIHKLHPLI DEFIPTLEGE NGICYTHPEK LPGVSKDGLI RHFFHRPSKA  120
YTTGTRKRRK VHSDHEDGSE TRWHKTGKTR PVYNNSKLKG YKKILVLYTN YGKQRKPEKT  180
NWVMHQYHLG SDEEEKEGVL VVSKVFYQTQ PRQCGGNSLI MKDSILGKTM KGQSGNEVMN  240
GKNSTNGSFV EYYHSNFISF DQGNQHRSSN AQVISHFQGA PFNP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.110635e-46root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g078875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456684.10.0NAC domain-containing protein 73
SwissprotO494591e-112NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A072UXW50.0A0A072UXW5_MEDTR; NAC transcription factor-like protein
STRINGXP_004505536.11e-176(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-115NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]