PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g078710.1 | ||||||||
Common Name | ERF-6, MTR_4g078710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24008.9 Da PI: 9.7203 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a+++a+++++g Medtr4g078710.1 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDNAARQFRG 76 58*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.8E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.13E-32 | 27 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.4E-33 | 27 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.63 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-22 | 27 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-40 | 27 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MVTKTKNAAN LKIKKPSNNN NNATEIHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA 60 EEAARAYDNA ARQFRGPKAK TNFPPPPSDV KEDSPSQSST VESSVPAPDR EVTRREVPTG 120 GSVMDRFPFL SIQQQIMPFA GAGAGAVDGM VPVFFYDPAG RAEFLNQRFT NRFEPEPVQF 180 NIGFGGGVQS DSDSSSVVDC QPKRALNLDL NLAPPMEY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 27 | 84 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-21 | 27 | 84 | 5 | 63 | ATERF1 |
3gcc_A | 5e-21 | 27 | 84 | 5 | 63 | ATERF1 |
5wx9_A | 1e-20 | 28 | 84 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.15362 | 0.0 | leaf| pod| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g078710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC151527 | 0.0 | AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence. | |||
GenBank | DQ344024 | 0.0 | DQ344024.1 Medicago truncatula ethylene-responsive element-binding protein (ERF-6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607496.1 | 1e-160 | ethylene-responsive transcription factor 9 | ||||
Swissprot | Q9FE67 | 3e-49 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | Q2I2S8 | 1e-159 | Q2I2S8_MEDTR; Ethylene response factor | ||||
STRING | AES89693 | 1e-159 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-36 | erf domain protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g078710.1 |
Entrez Gene | 11438813 |
Publications ? help Back to Top | |||
---|---|---|---|
|