PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g078660.1
Common NameMTR_4g078660
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 318aa    MW: 35857.4 Da    PI: 8.4429
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g078660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74e-08103125326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       e C++++r G C +G+ C F+Hg
  Medtr4g078660.1 103 GEVCPDYRR-GNCDRGEACEFSHG 125
                      689******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.3E-6100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023100127IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6104125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4104127IPR000571Zinc finger, CCCH-type
SMARTSM003562.8135158IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258135159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSSVLCQDQQ KLLLSLKKSL TLRDTIMDNI PPRKLLTRRS PTTTAVTDMF SDEDPFSSDH  60
FRMYEFKIRR CTRSRSHDWT DCPFAHPGEK ARRRDPLRYQ YSGEVCPDYR RGNCDRGEAC  120
EFSHGVFECW LHPSRYRTEA CKDGKNCKRK ICFFAHTPRQ LRVLLLPPLS PSPTPPQKNN  180
KKCCSFCHCC SNSSSPTSTL LSGPHFSSSN SPPLSPLSNS NSKDVHVLNE LIRSMESFNF  240
GDDIVHEANS PVSASKLNWI NNNNNNPNSV ANSSLGCGKY YNSSGGGSGM FLRDEQRIKV  300
VDNDVTPDFG WVNELLM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g078660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515270.0AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607493.10.0zinc finger CCCH domain-containing protein 61
SwissprotQ9ZWA15e-76C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLG7JTW10.0G7JTW1_MEDTR; Putative transcription factor C3H family
STRINGAES896900.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-62C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]