PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g078160.1
Common NameMTR_4g078160
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 394aa    MW: 42622.9 Da    PI: 8.2101
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g078160.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.8e-06220322
                     S---SGGGGTS--TTTTT-S CS
          zf-CCCH  3 telCrffartGtCkyGdrCk 22
                     +e+C++f+r G C++G +C+
  Medtr4g078160.1  2 REICQHFLR-GRCRFGTTCR 20
                     699******.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.253126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MREICQHFLR GRCRFGTTCR NIHQQQQRTS NNNGFGGGGG GGQQNTNPFG FGSTSTSASN  60
NHQPKTNPFG FGSQNNGAPR SDFKPNQSQP LENNKWSRSS SKPQNGTPRQ SDNNSQTVNH  120
KCTDPEACKR QIVEDFQQEK PLWILTCYGH CKGAPCDIVG DISYEELRAA AYEDNKKGMS  180
LPQIVEKEKN ILQSKLVEFN KLLSEPYKMP LTSSLNIQNF QSNGANVNAF QPATQNFQSN  240
GANANAFQPA TQNNGPLSVS SFSQLGASLN PGFGRPSAPL MSTPVQPSSI GGGGNFFTPN  300
SGNLFGSGIS GGQVNPFPTP VGLTGFPGST SQFQQPPFGF NNTSSTTMFQ TAPDVQLNTS  360
QVENVSVDDS IWLKEKWNPG EIPEQAPPDR FVW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.215440.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g078160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1433490.0BT143349.1 Medicago truncatula clone JCVI-FLMt-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607452.10.0zinc finger CCCH domain-containing protein 16
TrEMBLG7JSU20.0G7JSU2_MEDTR; CCCH-type zinc finger protein, putative
STRINGAES896490.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.22e-66C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]