PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g071110.1

Common Name

MTR_4g071110

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

SRS

Protein Properties

Length: 265aa MW: 30126.1 Da PI: 8.4941

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g071110.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	91.8	1.5e-28	14	76	5	67
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa 67 + +CqdCGnqakkdCa++RCR CCk++gf+C+th++stW+pa++rr+r+++ + +++ +++++ Medtr4g071110.1 14 GPKCQDCGNQAKKDCAYSRCRSCCKNKGFNCHTHIRSTWIPADRRRHRMDHPSDQHHLHEHKR 76 569*********************************************998776655554444 PP
2	DUF702	65	2.6e-20	74	141	88	155
DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 +++ ++ ++ ++++ ++P+ ss+ cv+v+s+d+ +e+aYqt+v+igGhvf+GiLydqG++e+ Medtr4g071110.1 74 HKRHKQINTISSSDEFKFPAVTSSMTTLTCVQVRSMDETVNETAYQTSVEIGGHVFSGILYDQGPDEQ 141 44455556666667777************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.5E-41	15	139	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.5E-24	16	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.8E-15	90	138	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MHSTQLGEEE VLKGPKCQDC GNQAKKDCAY SRCRSCCKNK GFNCHTHIRS TWIPADRRRH 60 RMDHPSDQHH LHEHKRHKQI NTISSSDEFK FPAVTSSMTT LTCVQVRSMD ETVNETAYQT 120 SVEIGGHVFS GILYDQGPDE QSFNNIHPLD QQQNLNLFSS NVIHTGDDGA SASATIAATA 180 SHRRLLYPPP HPLPSFRPVG RRYLWQCVWE VAIIVFHACL LSYAPKPKVR KWYRLSRSFV 240 NECIFSNSDL FATTLIEYIK VALR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g071110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146745	0.0	AC146745.21 Medicago truncatula clone mth2-53p19, complete sequence.
GenBank	AC149637	0.0	AC149637.11 Medicago truncatula clone mth2-181h2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024636124.1	1e-149	protein SHI RELATED SEQUENCE 3
TrEMBL	G7JIL8	0.0	G7JIL8_MEDTR; Zinc finger, LRP1 type protein
STRING	AES89201	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9969	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	2e-38	SHI-related sequence3

Link Out ? help Back to Top
Phytozome	Medtr4g071110.1
Entrez Gene	11439633

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]