PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g068320.1 | ||||||||
Common Name | MTR_4g068320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 430aa MW: 48515.1 Da PI: 8.8576 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.4 | 2.3e-17 | 7 | 96 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 k + +++l+ ++l+lp +f++++gg+ s t+tl+ ++g +W+v + +k ++++++ +GW+eFv+ + +g +vFk++g+s f +v +f Medtr4g068320.1 7 HKLVL-PSTLQAKQLRLPDDFMRKYGGD--ISPTVTLTVPDGSVWRVIM--KKVDNKFWFLDGWNEFVQNYSISTGYLLVFKYEGKSHF--TVNIF 95 44444.45555567***********998..6779***************..*********************************99999..88888 PP - CS B3 98 r 98 + Medtr4g068320.1 96 S 96 6 PP | |||||||
2 | B3 | 57.9 | 1.8e-18 | 298 | 388 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 vl ps+ + ++++lp fae++ +g++ ++l+ ++gr+W v++ yr+++ l++GW eF +n+L egD++vF+l+ ++e l v+v Medtr4g068320.1 298 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---IIKLQISDGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELVATKEVVLQVTV 386 78899******************866643...6***************665555..66*************************99999999999 PP E- CS B3 97 fr 98 fr Medtr4g068320.1 387 FR 388 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.47E-23 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-23 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.03E-20 | 4 | 96 | No hit | No description |
PROSITE profile | PS50863 | 13.366 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-19 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-14 | 9 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-24 | 287 | 388 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-24 | 288 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.53E-22 | 293 | 388 | No hit | No description |
SMART | SM01019 | 4.8E-17 | 295 | 390 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.888 | 295 | 390 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-16 | 298 | 388 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MPSPSFHKLV LPSTLQAKQL RLPDDFMRKY GGDISPTVTL TVPDGSVWRV IMKKVDNKFW 60 FLDGWNEFVQ NYSISTGYLL VFKYEGKSHF TVNIFSLPTS EINYQSPAQR SNEASLFGKR 120 LTIFEEMEDE DSVEIMESSP TKLTPSLLQN KAVSGSADKL TPGKSRPPPA LQNLFNGSKL 180 NSINWGEGGN TPSRNDNSVD NQLTRDIGLQ FNVVEFKKSN EELKLRAATD EKVKKTAVKK 240 RKSDVQEPPS EHEDEVEMRN RFYESASARK RTATAEEREK AINAAKTFEP SNPFCRVVLR 300 PSYLYRGCIM YLPSCFAEKN LNGVSGIIKL QISDGRQWPV RCLYRGGRAK LSQGWFEFSL 360 ENNLGEGDVC VFELVATKEV VLQVTVFRIT EDEGPLSPQP LQQNQHVNPV KLVNVPFQHH 420 LASTKLIRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-70 | 261 | 391 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-70 | 261 | 391 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.1907 | 0.0 | root| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g068320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT051653 | 0.0 | BT051653.1 Medicago truncatula clone MTYF5_F6_F7_F81G-K-20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606842.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
Swissprot | Q8L3W1 | 1e-124 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | G7JEY1 | 0.0 | G7JEY1_MEDTR; B3 domain transcription factor VRN1-like protein | ||||
STRING | AES89039 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-125 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g068320.1 |
Entrez Gene | 11412282 |
Publications ? help Back to Top | |||
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