PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g068000.3
Common NameMTR_4g068000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Nin-like
Protein Properties Length: 913aa    MW: 101635 Da    PI: 5.0798
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g068000.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.23.9e-29580630252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  Medtr4g068000.3 580 EKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKV 630
                      79***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.461562650IPR003035RWP-RK domain
PfamPF020423.0E-26582630IPR003035RWP-RK domain
SuperFamilySSF542773.36E-22820907No hitNo description
Gene3DG3DSA:3.10.20.2403.5E-23821903No hitNo description
PROSITE profilePS5174522.509824906IPR000270PB1 domain
SMARTSM006666.4E-22824906IPR000270PB1 domain
CDDcd064071.20E-30825904No hitNo description
PfamPF005649.6E-18826904IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MEGQYSSKER GGISLWTPFD SGMKSSLNSD DMFNNISELM NFDSYAGWCN GSSSITDQTL  60
TNDLSSFAYD GLNLSEHING PFFMTEIGGN YNVMDSYDEK VLLQEMETQL EFLDNNSNET  120
NNNLDSQQNG SYDMCNYIIS KSPSWSLDER MMSALSFFKE SAGGGILAQV WAPIKYGDDF  180
ILTTSDQPYL LDQKLAGYRE VSRSFTFSAE MKMGSCCAGL PGRVFNSHVP EWTSNVGYYH  240
KSEYLRLDHA ISHEVRGSIA LPISDMNSEV SCCAVLELVT TKEKPNFDKE LEFVSHALQR  300
VNLRTIMPPR LLPQCVSSNK RAALTEITDV LRAVCHAHSL PLALTWIPCC YSEGKGEESE  360
RIRIKEGHIT SSNEKCVLCI EESACYINDK MVGGFVHACS EHHLEEGQGI SGKALQSNHP  420
FFYTDVKAYD VSEYPLVHHA RKYNLNAAVA IRLRSTYTND DDYVLEFFLP INMIGSSEQQ  480
LLLDNLSDTM RRICKSLRTV SEAELRGMEG SQYEFQKENV SGFFPMSRGN SQIAFSSGDN  540
DLFQMSFNET NLKNSGNQAA YSQATSGSRK QAEKKRSAVE KNVSLSVLQQ YFSGSLKDAA  600
KKIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV LDSVQGVEGV LKFDPHTGGF  660
VAGGSIIQQI GKHNKTLKFP EKASVPKLED EDVLVSNSCE VELEKDNAIS VDCIEDSTTW  720
LWTKTQDCPK QTTIDYVLEK EQDQCGLDNS SLHDIGSHSS FSMIELGFEE GKGADEHNNP  780
TSSSMTDSSN ASGSMVNGSS SGSQSIENQK HSKVKSICVD SESKFAVKAN YRGDTIRFKF  840
DPSVGCCQLY EEVAKRFKLQ NGSFQLKYLD DEEEWVMLVN DSDLKECVEV LSDIGTHCVK  900
LLVRNIHGGS DS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.207360.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g068000.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636796.10.0protein NLP9
RefseqXP_024636798.10.0protein NLP9
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLG7JDS30.0G7JDS3_MEDTR; Plant regulator RWP-RK family protein
STRINGAES890090.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.20.0Nin-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]