PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g068000.1 | ||||||||
Common Name | MTR_4g068000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Nin-like | ||||||||
Protein Properties | Length: 913aa MW: 101635 Da PI: 5.0798 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.2 | 3.9e-29 | 580 | 630 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Medtr4g068000.1 580 EKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKV 630 79***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.461 | 562 | 650 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.0E-26 | 582 | 630 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.36E-22 | 820 | 907 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 3.5E-23 | 821 | 903 | No hit | No description |
PROSITE profile | PS51745 | 22.509 | 824 | 906 | IPR000270 | PB1 domain |
SMART | SM00666 | 6.4E-22 | 824 | 906 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.20E-30 | 825 | 904 | No hit | No description |
Pfam | PF00564 | 9.6E-18 | 826 | 904 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 913 aa Download sequence Send to blast |
MEGQYSSKER GGISLWTPFD SGMKSSLNSD DMFNNISELM NFDSYAGWCN GSSSITDQTL 60 TNDLSSFAYD GLNLSEHING PFFMTEIGGN YNVMDSYDEK VLLQEMETQL EFLDNNSNET 120 NNNLDSQQNG SYDMCNYIIS KSPSWSLDER MMSALSFFKE SAGGGILAQV WAPIKYGDDF 180 ILTTSDQPYL LDQKLAGYRE VSRSFTFSAE MKMGSCCAGL PGRVFNSHVP EWTSNVGYYH 240 KSEYLRLDHA ISHEVRGSIA LPISDMNSEV SCCAVLELVT TKEKPNFDKE LEFVSHALQR 300 VNLRTIMPPR LLPQCVSSNK RAALTEITDV LRAVCHAHSL PLALTWIPCC YSEGKGEESE 360 RIRIKEGHIT SSNEKCVLCI EESACYINDK MVGGFVHACS EHHLEEGQGI SGKALQSNHP 420 FFYTDVKAYD VSEYPLVHHA RKYNLNAAVA IRLRSTYTND DDYVLEFFLP INMIGSSEQQ 480 LLLDNLSDTM RRICKSLRTV SEAELRGMEG SQYEFQKENV SGFFPMSRGN SQIAFSSGDN 540 DLFQMSFNET NLKNSGNQAA YSQATSGSRK QAEKKRSAVE KNVSLSVLQQ YFSGSLKDAA 600 KKIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV LDSVQGVEGV LKFDPHTGGF 660 VAGGSIIQQI GKHNKTLKFP EKASVPKLED EDVLVSNSCE VELEKDNAIS VDCIEDSTTW 720 LWTKTQDCPK QTTIDYVLEK EQDQCGLDNS SLHDIGSHSS FSMIELGFEE GKGADEHNNP 780 TSSSMTDSSN ASGSMVNGSS SGSQSIENQK HSKVKSICVD SESKFAVKAN YRGDTIRFKF 840 DPSVGCCQLY EEVAKRFKLQ NGSFQLKYLD DEEEWVMLVN DSDLKECVEV LSDIGTHCVK 900 LLVRNIHGGS DS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.20736 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g068000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636796.1 | 0.0 | protein NLP9 | ||||
Refseq | XP_024636798.1 | 0.0 | protein NLP9 | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | G7JDS3 | 0.0 | G7JDS3_MEDTR; Plant regulator RWP-RK family protein | ||||
STRING | AES89009 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g068000.1 |
Entrez Gene | 11422046 |
Publications ? help Back to Top | |||
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