PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g064200.1
Common NameMTR_4g064200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 653aa    MW: 73442.8 Da    PI: 5.985
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g064200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.41.7e-1152836493373
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL++cA+av s d+++a+ +L+++++++sp+gd +qRla+yf+ +L+arl+  ++ +yk l++s+++     + l a+k++  +sP+ ++s++
  Medtr4g064200.1 283 TLLTQCAQAVGSYDQRNANDILKQIRQHSSPSGDGLQRLAHYFADGLEARLSA-GTPMYKLLQSSSAA-----DMLRAHKVYITASPFQRMSNF 370
                      69**************************************************9.99999988887775.....999****************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +aN++Il+ ve+++ +HiiDf++ +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+rL k+++++gvpfe+n  +a+++++
  Medtr4g064200.1 371 LANRTILKLVENKSSLHIIDFGVFYGFQWPCLIQRLSERSGGPPRLRITGIDLPQPGfrPAERVEETGRRLVKYCKRFGVPFEYNC-LAQKWDT 463
                      ********************************************************9*****************************.6****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.ee 281
                      l+le+L+++++E+++Vn+ ++l+++ de+v+ + +rd+vL+l+++++P+++++   +  +n++ Fl+rf eal ++s+lfd+lea++pre+ + 
  Medtr4g064200.1 464 LRLEDLKIDREEVTVVNCLHRLKNVSDETVTENCPRDAVLRLIRRINPNIFIHGVVNGTYNAPFFLTRFREALFHFSSLFDMLEATVPREDdQY 557
                      *****************************************************************************************99899 PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      r ++E+ l+gr++vnv+acegaer+er et+++W+ r ++a Fk++pl  + ++ +k +++k + + + v+e+ +++++gWk+r L++vS+W
  Medtr4g064200.1 558 RLMIEKGLFGRDAVNVIACEGAERVERPETYKQWQVRNKRARFKQLPLAPELVDRVKEMVKKEYPKDFVVDEDGKWVLQGWKGRILLAVSCW 649
                      ***************************************************************9777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.154255630IPR005202Transcription factor GRAS
PfamPF035146.0E-113283649IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MFSTETLVEN FPGSVNGCMF GNIPVSVFSN QNPENAFKFE DSNSISPSSD SVPSSVITSN  60
GESSESSKYS NPILRYISDI LMDEEDLETK PCMLQDCLKL QAAEKSFYDV LGSVTGTSSS  120
SESYSNCSYN TDNSVVDCDS PENNAYEVFD KIPYDPRGFF GSPSDVWKMN EEGSFVLGSR  180
GLGEKRGYLM NCNDIGISHE EDLRRNKVSA VYYDDTELSE MFDDVLLCKD GKSPSIFCDN  240
SESSQSQISG SGRSNGTSNG KTSRSKKGSG KGKKLSTTVD LWTLLTQCAQ AVGSYDQRNA  300
NDILKQIRQH SSPSGDGLQR LAHYFADGLE ARLSAGTPMY KLLQSSSAAD MLRAHKVYIT  360
ASPFQRMSNF LANRTILKLV ENKSSLHIID FGVFYGFQWP CLIQRLSERS GGPPRLRITG  420
IDLPQPGFRP AERVEETGRR LVKYCKRFGV PFEYNCLAQK WDTLRLEDLK IDREEVTVVN  480
CLHRLKNVSD ETVTENCPRD AVLRLIRRIN PNIFIHGVVN GTYNAPFFLT RFREALFHFS  540
SLFDMLEATV PREDDQYRLM IEKGLFGRDA VNVIACEGAE RVERPETYKQ WQVRNKRARF  600
KQLPLAPELV DRVKEMVKKE YPKDFVVDED GKWVLQGWKG RILLAVSCWV PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5028765124379Protein SCARECROW
5b3h_D1e-5028765124379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g064200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742900.0AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606673.10.0scarecrow-like protein 14
SwissprotQ9XE581e-175SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7JUU00.0G7JUU0_MEDTR; GRAS family transcription factor
STRINGAES888700.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-169SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]