PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g064180.1
Common NameMTR_4g064180
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 629aa    MW: 72032.4 Da    PI: 6.0723
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g064180.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.42.6e-1102516231371
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkf 93 
                      l++lLl c +a+ ++d+++a+ lL+++++++sp g++ qR+a+yf+++L+arl+     +++++ +s+++++   +e l+a+++ +   P+ kf
  Medtr4g064180.1 251 LRNLLLMCSQAMYANDNRNANDLLKQIRQHSSPFGEASQRVAHYFANGLEARLVC-DRACAQTFYSSPSTKRItAAEFLKAYQVHFTSPPFKKF 343
                      689***************************************************8.67777777666655443499****************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      ++l  N++I++ ++++e++HiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p +g   ke++eetg+rLa+++++++v fe+n+l++++
  Medtr4g064180.1 344 AYLFGNEMIMKVAAKAETLHIIDFGILYGFQWPMLIKFLSNREGGPPKLRITGIEFPLPGfrPKERIEETGRRLANYCKRFNVLFEYNALASRK 437
                      *********************************************************99999****************************999* PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      +e++++e+L++k++E++aVn+v + ++lldes +++s+r+ vL+l+++++P++++++  + ++ns+ F++rf eal  +sa++d+l+a +p+ s
  Medtr4g064180.1 438 WETIRVEDLKIKSNEVVAVNCVGRFKNLLDESIEINSPRNVVLHLIRKINPDIFTLSTINGSYNSPFFATRFREALFNFSAIYDMLDAVIPKGS 531
                      ********************************************************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      e+r+++Ere++gre++nvvaceg er+er et+++W+ r ++aGFk++pl+++ +++ ++ lr+ + + +  +e+s+++++gWk+r L++ +
  Medtr4g064180.1 532 EWRRMLEREIMGREVMNVVACEGLERVERPETYKQWQVRNTRAGFKQLPLDSQLMEKFRTKLRQWYHRDFVFDEDSNWMLQGWKGRILYAST 623
                      ******************************************************************999*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.277225606IPR005202Transcription factor GRAS
PfamPF035149.1E-108251623IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDPNCDEFQQ YEKPIEGYMA SVTDSSMEDT DFSETIKFIT QILMEENVDQ RPFYDPLSLQ  60
ITEKSFHDAL SPNGTTSTSC NSNSNSSIDD SHESKPFSPD TPVSDLVNHG FQFNSCASSS  120
VSDGPINFDS SITNMLAENI FSNADSVSQF NRGFEEANKF LPPQPQLLTG LESSNFNMMK  180
SRKNHGREEE EGSSNKQSAI SVVDEDELSE MFDKALLNVE REFLQNEQPP SSNEGKVRPK  240
KRDSKNKTID LRNLLLMCSQ AMYANDNRNA NDLLKQIRQH SSPFGEASQR VAHYFANGLE  300
ARLVCDRACA QTFYSSPSTK RITAAEFLKA YQVHFTSPPF KKFAYLFGNE MIMKVAAKAE  360
TLHIIDFGIL YGFQWPMLIK FLSNREGGPP KLRITGIEFP LPGFRPKERI EETGRRLANY  420
CKRFNVLFEY NALASRKWET IRVEDLKIKS NEVVAVNCVG RFKNLLDESI EINSPRNVVL  480
HLIRKINPDI FTLSTINGSY NSPFFATRFR EALFNFSAIY DMLDAVIPKG SEWRRMLERE  540
IMGREVMNVV ACEGLERVER PETYKQWQVR NTRAGFKQLP LDSQLMEKFR TKLRQWYHRD  600
FVFDEDSNWM LQGWKGRILY ASTCLVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4725862725379Protein SCARECROW
5b3h_D3e-4725862725379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g064180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742900.0AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606671.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7JUT80.0G7JUT8_MEDTR; GRAS family transcription factor
STRINGAES888680.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]