PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g064160.1
Common NameMTR_4g064160
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 687aa    MW: 78061 Da    PI: 5.8534
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g064160.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.56.5e-1153136831373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++ L+ cA+ vss+d ++a++lL ++++ +sp gd  qRla++f++AL+ar+a++++++y al ++++s    ++ ++a++++  ++P+ k++
  Medtr4g064160.1 313 LRTMLVLCAQYVSSDDRANANELLRQIRQYSSPLGDGSQRLAHCFANALEARMAGTGTQIYTALYSKRNS---AADMVKAYQMYISACPFKKLA 403
                      57899*********************************************************99999888...89******************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + aN++Il+ +++ e++Hi+Df+i +G+QWpaL+  L++Rp+gpp+lR+Tg++ p++g   +e+++etg rLa+++e+++vpfefn+ +a+++
  Medtr4g064160.1 404 IIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRLTGIELPQPGfrPAERVQETGLRLARYCERFNVPFEFNA-IAQKW 496
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E l+Vn+v +l++llde+v l+s+rd+vLkl+++++P++++++  + ++n++ F++rf eal  ys++fd l+ +++re++
  Medtr4g064160.1 497 ETIKVEDLKIKKNELLVVNSVCRLKNLLDETVVLNSPRDAVLKLIRDTNPNIFIHTTVNGSYNAPFFATRFKEALFNYSTMFDVLDINVAREDQ 590
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +r + E+e+ gre++n++aceg++r+er et++kW+ r ++aGF+ +pl+++  ++ ++ l+ v+   +++ e+ +++++gWk+r +++ S+W
  Medtr4g064160.1 591 TRLMFEKEFWGREVMNIIACEGSQRVERPETYRKWQVRNTRAGFRHLPLDKHLINKLRCKLKDVYHSDFMLVEDGNCMLQGWKGRIIYASSCW 683
                      *****************************************************************777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.79287664IPR005202Transcription factor GRAS
PfamPF035142.3E-112313683IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MDHTFGFMDK PFLQPDPNNA TEEEEDSPLD EIDFSSTVLR YINQMLMEED MDMKPCMFHD  60
SLALQAAEKS FYEVIGQTYP SSSVQSPDDS FNSNFSSSNS VEVESYLSKF DVSEHNPSIL  120
KTHFPVDFVF QASSINGSSN SSSDFGVTGG GFRDGFPDSN LISKNESVLQ FERGVEEANK  180
FLPKVNPFII DLESNPFVPS FRREVQVQEV VVERESDERE HFSAESRGRK NHERGDELGL  240
QDERSNKQSA FYTDDDSELS ELFDKVLLGT GCRKEEKANG SDMSVQQKEE ANNSGGGKSR  300
GKKQGNKKGV VDLRTMLVLC AQYVSSDDRA NANELLRQIR QYSSPLGDGS QRLAHCFANA  360
LEARMAGTGT QIYTALYSKR NSAADMVKAY QMYISACPFK KLAIIFANHT ILNLAKEVET  420
LHIVDFGIRY GFQWPALIYR LSKRPGGPPK LRLTGIELPQ PGFRPAERVQ ETGLRLARYC  480
ERFNVPFEFN AIAQKWETIK VEDLKIKKNE LLVVNSVCRL KNLLDETVVL NSPRDAVLKL  540
IRDTNPNIFI HTTVNGSYNA PFFATRFKEA LFNYSTMFDV LDINVAREDQ TRLMFEKEFW  600
GREVMNIIAC EGSQRVERPE TYRKWQVRNT RAGFRHLPLD KHLINKLRCK LKDVYHSDFM  660
LVEDGNCMLQ GWKGRIIYAS SCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5132068525379Protein SCARECROW
5b3h_D2e-5132068525379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.105560.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g064160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742900.0AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606670.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7JUT70.0G7JUT7_MEDTR; GRAS family transcription factor
STRINGAES888670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]