PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g064150.1
Common NameMTR_4g064150
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 736aa    MW: 83871.8 Da    PI: 5.006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g064150.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.53.7e-1123587321373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl c + v ++d+++a++lL+++++++sp+gd  qRla+yf+++L+ar+++ +++     ++ +t++ +++e l+a+++   +sP+ kf+
  Medtr4g064150.1 358 LRNLLLMCSQSVYANDNRNANELLKQIRQHSSPSGDGPQRLAHYFANGLEARIVGDGTRAQTFYSSPSTKRISTAEFLKAYQVHLSTSPFKKFA 451
                      6899***************************************************888888777777777778********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN++I++a +++e++HiiDf+i +G+QWp L++ L++R++gpp+l+iTg++ p +g    e++eetg+rLa+++++++vpfefn++ ++ +
  Medtr4g064150.1 452 YFFANKMIMKASANAETLHIIDFGILYGFQWPILIKFLSDREGGPPNLKITGIEFPLPGfrPMEKIEETGRRLADYCKRFHVPFEFNAIPSRYW 545
                      ********************************************************99999***************************9999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E+++Vn+ ++ ++lldes +++s+r++vL+l+++++P ++v +  + ++ns+ F++rf eal ++sal+d++++ +pre++
  Medtr4g064150.1 546 ETIQVEDLKIKSNEVVVVNSLMRFKNLLDESIEVNSPRNAVLHLIRKINPAIFVQSIVNGSYNSPFFATRFREALFHFSALYDMFDTVIPRENK 639
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r+ +Ere +gre++nvvaceg er+er et+++W+ r ++aGFk++pl+++ +++ ++ l++++ + +  + +++++++gWk+r L++ ++W
  Medtr4g064150.1 640 YRMLMERESIGREAMNVVACEGLERVERPETYKQWQVRNTRAGFKQLPLNSELMDKFRTKLQQCYHKDFVFDVDNDWMLQGWKGRILYASTCW 732
                      *****************************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.568332713IPR005202Transcription factor GRAS
PfamPF035141.3E-109358732IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MDPNFPPASD FTNGYYHFGE ERSILVSEFD PNQYDSYLDA DPNQYDSFLE ADPNQYDSFL  60
GADPLDFAAT TFPIEGCMAS ATDPSLEDTD FSDTGKFINQ ILMEENVDQR PFYDPLSLQM  120
TEKSFYDALL HTNKPLSPNQ HPLDIHNSDG TTSSNSNSNS SVDDSRESKP LSPDTPVSDH  180
VNHVFQFNSP AVSQPHSTGV SNGLRDLDSS ITQMAQNIFS DADSVSLFNK SLEEANKFLP  240
PQPQLFTGFE SSNLDIAREE ENPFVLKSRK NHKREESFSQ EQEEEAWRSS KQSAISAVDE  300
DELSEMFDKV LLNVGHMPLC NEHDCLQNGQ VKTEELPPSN GAKTRPKKQG KKNETIDLRN  360
LLLMCSQSVY ANDNRNANEL LKQIRQHSSP SGDGPQRLAH YFANGLEARI VGDGTRAQTF  420
YSSPSTKRIS TAEFLKAYQV HLSTSPFKKF AYFFANKMIM KASANAETLH IIDFGILYGF  480
QWPILIKFLS DREGGPPNLK ITGIEFPLPG FRPMEKIEET GRRLADYCKR FHVPFEFNAI  540
PSRYWETIQV EDLKIKSNEV VVVNSLMRFK NLLDESIEVN SPRNAVLHLI RKINPAIFVQ  600
SIVNGSYNSP FFATRFREAL FHFSALYDMF DTVIPRENKY RMLMERESIG REAMNVVACE  660
GLERVERPET YKQWQVRNTR AGFKQLPLNS ELMDKFRTKL QQCYHKDFVF DVDNDWMLQG  720
WKGRILYAST CWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-473417341379Protein SCARECROW
5b3h_D1e-473417341379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.7040.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g064150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742900.0AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606669.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7JUT60.0G7JUT6_MEDTR; GRAS family transcription factor
STRINGAES888660.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]