PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g064120.1
Common NameMTR_4g064120
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 629aa    MW: 71759 Da    PI: 6.0722
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g064120.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.81.6e-1092516231371
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl c +a+ ++d+++a+ lL+++++++sp gd+ qR+a+yf+++L+arl++   +     ++ +t++ + +e l+a+++ +   P+ kf+
  Medtr4g064120.1 251 LRNLLLMCSQAMYANDNRNANDLLKQIRQHSSPFGDASQRVAHYFANGLEARLVGDRAGAQTFYSSPSTKRITAAEFLKAYQVHFTSPPFKKFA 344
                      689****************************************************777777666666777777********************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +l  N++I++ ++++e++HiiDf++ +G+QWp L++ L++R++gpp+lRiTg++ p +g   +e++eetg+rLa+++++++vpfe+n+l+++++
  Medtr4g064120.1 345 YLFGNEMIMKVAAKAETLHIIDFGVLYGFQWPMLIKFLSNREGGPPKLRITGIEFPLPGfrPTERIEETGRRLANYCKRFNVPFEYNALASRKW 438
                      ********************************************************99999****************************999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e++++e+L++k++E++aVn+v + ++lldes +++s+r+ vL+l+++++P+++ ++  + ++ns+ F++rf eal  +sa++d+l+a +p+ se
  Medtr4g064120.1 439 ETIRVEDLKIKSNEVVAVNCVGRFKNLLDESIEVNSPRNVVLHLIRKINPDIFALSIINGSYNSPFFATRFREALFNFSAIYDMLDAVIPKGSE 532
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +r+++Ere++gre++nvvaceg er+er et+++W+ r ++aGFk++pl+++ +++ ++ l++ + + +  +e+s+++++gWk+r L++ +
  Medtr4g064120.1 533 WRRMIEREIMGREVMNVVACEGLERVERPETYKQWQVRNTRAGFKQLPLDSQLMEKFRTKLKQWYHRDFVFDEDSKWMLQGWKGRILYAST 623
                      *****************************************************************999*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.334225606IPR005202Transcription factor GRAS
PfamPF035145.4E-107251623IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MDPNCDEFQQ YEKPIEGYMA SVTDSSMEDT DFSETIKFIT QILMEENVDQ RPFYDPLSLQ  60
ITEKSFHDAL SPNGTTSTSC NSNSNSSIDD SHESKPFSPD TPVSDLVNHG FQFNSCASSS  120
VSDGPINFDS SITNMLAENI FSNADSVSQF NRGFEEANKF LPPQPQLLTG LESSNFNMMK  180
SRKNHGREEE EGSSNKQSAI SVVDEDELSE MFDKALLNVD REPLQNEQPP SSNEGKVRPK  240
KRDSKNKTID LRNLLLMCSQ AMYANDNRNA NDLLKQIRQH SSPFGDASQR VAHYFANGLE  300
ARLVGDRAGA QTFYSSPSTK RITAAEFLKA YQVHFTSPPF KKFAYLFGNE MIMKVAAKAE  360
TLHIIDFGVL YGFQWPMLIK FLSNREGGPP KLRITGIEFP LPGFRPTERI EETGRRLANY  420
CKRFNVPFEY NALASRKWET IRVEDLKIKS NEVVAVNCVG RFKNLLDESI EVNSPRNVVL  480
HLIRKINPDI FALSIINGSY NSPFFATRFR EALFNFSAIY DMLDAVIPKG SEWRRMIERE  540
IMGREVMNVV ACEGLERVER PETYKQWQVR NTRAGFKQLP LDSQLMEKFR TKLKQWYHRD  600
FVFDEDSKWM LQGWKGRILY ASTCLVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4725862725379Protein SCARECROW
5b3h_D1e-4725862725379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g064120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742900.0AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606667.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7JUT40.0G7JUT4_MEDTR; GRAS family transcription factor
STRINGAES888640.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]