PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g063100.1 | ||||||||
Common Name | MTR_4g063100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 29491.6 Da PI: 5.4076 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.3 | 2e-14 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ v ++G ++W+ Ia+ g+ R++k+c++rw +yl Medtr4g063100.1 9 KGPWTEQEDYKLAYFVGLFGDRRWDFIAKVSGLSRSGKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l +++ ++G++ W++Iar+++ gRt++++k++w++++ Medtr4g063100.1 62 RGKMTPQEERLVMELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.913 | 4 | 56 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-13 | 8 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.15E-28 | 8 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-13 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.73E-9 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 27.342 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-24 | 64 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.21E-11 | 64 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MVSQEISRKG PWTEQEDYKL AYFVGLFGDR RWDFIAKVSG LSRSGKSCRL RWVNYLHPDL 60 KRGKMTPQEE RLVMELHSKW GNRWSRIARK LPGRTDNEIK NYWRTHMRKK RAQEKKHATP 120 SISSSPDQSS SCQSSHFSNS NHGVDSHASN KESEEENYQV QEIEQGYSMD DIWKDIAMSE 180 DDINVLQPDF DGTSEENSNN LSCPIMPSTS SWDYSYLDPL WVMDEEESKM LFPPIGDQYF 240 SFYDQQGNTF LTG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-28 | 9 | 110 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-27 | 9 | 110 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-27 | 9 | 110 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-28 | 9 | 110 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-28 | 9 | 110 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.11183 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g063100.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT139288 | 0.0 | BT139288.1 Medicago truncatula clone JCVI-FLMt-11A19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606615.2 | 1e-160 | transcription factor MYB59 isoform X1 | ||||
Swissprot | Q9LX82 | 4e-78 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | G7JTP3 | 0.0 | G7JTP3_MEDTR; Myb transcription factor | ||||
STRING | AES88812 | 1e-173 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46130.1 | 3e-79 | myb domain protein 48 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g063100.1 |
Entrez Gene | 11414413 |
Publications ? help Back to Top | |||
---|---|---|---|
|