PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g060950.1 | ||||||||
Common Name | MTR_4g060950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20737.4 Da PI: 4.9284 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.9 | 2.7e-41 | 24 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca+d Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+ Medtr4g060950.1 24 PCAACKILRRRCAADkCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPEDQRADAVTSMVYEASARVRDPVYGCAGAICQLQKQVNELQAQ 117 7***********9877****************************************************************************** PP DUF260 94 lallkee 100 la+ ++e Medtr4g060950.1 118 LAKSQAE 124 **99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.669 | 23 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-41 | 24 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MESATSDTFT APTSSSTQAV VMSPCAACKI LRRRCAADKC VLAPYFPPTD PAKFTIAHRV 60 FGASNIIKFL QELPEDQRAD AVTSMVYEAS ARVRDPVYGC AGAICQLQKQ VNELQAQLAK 120 SQAEVVNMKL QQTNLVALFL EISQSPQESP QQISVDDFIQ SPSHSDGHHI GLNFLDDNTG 180 LCSGWDTLWT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-40 | 11 | 127 | 2 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-40 | 11 | 127 | 2 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g060950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149268 | 0.0 | AC149268.21 Medicago truncatula clone mth2-94j16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606493.1 | 1e-141 | LOB domain-containing protein 11 | ||||
Swissprot | Q9SK08 | 3e-74 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | G7JRG8 | 1e-139 | G7JRG8_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES88690 | 1e-140 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 6e-73 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g060950.1 |
Entrez Gene | 11410057 |
Publications ? help Back to Top | |||
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