PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g059710.1 | ||||||||
Common Name | MTR_4g059710, NF-YC7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YC | ||||||||
Protein Properties | Length: 180aa MW: 20321.7 Da PI: 10.2245 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 38.4 | 2.6e-12 | 71 | 161 | 9 | 99 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + ++++d k h +P+ ri+ +lk + ++s ea + +a e f+ +l+ ++ + + ++++l + ++ +v++ + +dfl d vp++ Medtr4g059710.1 71 DDDEEEDAKTHVFPMNRIRTMLKGEISDLRVSQEAILAINNAAEKFLEQLAEDAYGCCAQDRKKSLSYNHLSRVVSKQKRYDFLSDFVPEK 161 5678899******************99999**********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.08E-17 | 27 | 154 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.7E-12 | 83 | 145 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-21 | 83 | 160 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MASSNNSVAE NNKKKTKKPQ TSTPTSKIKK DNKNIEKSKE NNNKNKKKLN FTNGNSKEQE 60 ESGRKKKHAK DDDEEEDAKT HVFPMNRIRT MLKGEISDLR VSQEAILAIN NAAEKFLEQL 120 AEDAYGCCAQ DRKKSLSYNH LSRVVSKQKR YDFLSDFVPE KVKAEDALRE TNSRGNKGG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 66 | KKKLNFTNGNSKEQEESGRKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2417 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g059710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918299 | 0.0 | JQ918299.1 Medicago truncatula nuclear transcription factor Y subunit C7 (NF-YC7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606405.1 | 1e-128 | DNA polymerase epsilon subunit 4 | ||||
TrEMBL | G7JPE7 | 1e-127 | G7JPE7_MEDTR; Core histone H2A/H2B/H3/H4 | ||||
STRING | AES88602 | 1e-127 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-26 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g059710.1 |
Entrez Gene | 11416661 |
Publications ? help Back to Top | |||
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