PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g057635.1 | ||||||||
Common Name | MTR_4g057635 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 325aa MW: 36839.1 Da PI: 7.1668 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl Medtr4g057635.1 14 RGPWSPEEDSKLKDYIEKHGTGgNWISLPHKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.9 | 8.7e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Medtr4g057635.1 69 GDFSDEEDRIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.316 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.76E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.29E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.696 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MGRAPCCDKT SVKRGPWSPE EDSKLKDYIE KHGTGGNWIS LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDEEDRIIC SLYVNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM 120 QFPTLHHQRK PSFPPSPSSH QFLDYFTHTP TSLIDLQTIS LPSNNYPNTS FNPFYQNQES 180 MISVVNPPMQ YNYPIKDNMF MFGSEGSSSS DGSCTLSHGK EIKQEEIVYH HNMNSGGFDG 240 YNNNNNFMIN GNIGSFVGES VNQHEEKSSG VGYSYNNGQS QTLNPLLDYG LEDIKQLISS 300 SGNKGFHVDD IHKNEEIGMY YFDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.25186 | 4e-87 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g057635.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094587 | 1e-123 | BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013455940.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | A0A072UKP5 | 0.0 | A0A072UKP5_MEDTR; Myb transcription factor | ||||
STRING | XP_004506057.1 | 1e-167 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 4e-77 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g057635.1 |
Entrez Gene | 25492386 |
Publications ? help Back to Top | |||
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