PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g054360.1
Common NameMTR_4g054360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 269aa    MW: 30267.1 Da    PI: 9.7915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g054360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-17123173255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr+++ +g+++AeIrd    + k +r++lg+f taeeAa a+++a+   +g
  Medtr4g054360.1 123 VFRGVRRRP-WGKFAAEIRDsT--R-KGARVWLGTFNTAEEAALAYDQAAFLARG 173
                      59*******.**********32..2.24*********************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.1E-30122182IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-22123182IPR016177DNA-binding domain
SMARTSM003802.2E-35123187IPR001471AP2/ERF domain
PROSITE profilePS5103222.313123181IPR001471AP2/ERF domain
PfamPF008473.6E-13123172IPR001471AP2/ERF domain
PRINTSPR003671.9E-10124135IPR001471AP2/ERF domain
CDDcd000183.15E-30124183No hitNo description
PRINTSPR003671.9E-10147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MNFDPPVLRN QNQNLLYFNE NSFSNDNISW ELEDIVDFFN GDINFNKDSL SQTKESLLLP  60
LSLPAESNSS YPLLSNGSLE VSSNTTYTQV IKEKQTSFSL PLKKNTSSSS LPLPPIKESN  120
TRVFRGVRRR PWGKFAAEIR DSTRKGARVW LGTFNTAEEA ALAYDQAAFL ARGSLAVLNF  180
PEDVVKELLK EMARNSEPLE EGTSTSPVLA IKRKYIKRKS PNKVSKKKMK TDHNGDRTKR  240
ETNTKSKNVF VFEDLGAEYL EQLLSLTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-26124181360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-261241831574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g054360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1270211e-166AC127021.25 Medicago truncatula clone mth2-5e5, complete sequence.
GenBankAC1465891e-166AC146589.31 Medicago truncatula clone mth2-145o21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606197.10.0ethylene-responsive transcription factor 1B
TrEMBLG7JJQ40.0G7JJQ4_MEDTR; Ethylene-responsive transcription factor
STRINGAES883940.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-32ethylene response factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]