PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g049760.1
Common NameMTR_4g049760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 549aa    MW: 60555.4 Da    PI: 9.6135
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g049760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.26.1e-27290348259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK  k +++p++YYrC++a gCpv+k+v+r++ d +vv++tYeg+Hnh+
  Medtr4g049760.1 290 TDGCHWRKYGQKLTKRNPCPKAYYRCSMAcGCPVRKQVQRCDLDRTVVITTYEGNHNHP 348
                      7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-29275350IPR003657WRKY domain
SuperFamilySSF1182901.83E-24283350IPR003657WRKY domain
PROSITE profilePS5081127.806284350IPR003657WRKY domain
SMARTSM007744.9E-30289349IPR003657WRKY domain
PfamPF031066.1E-23291348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MDSNPLNSTI PFLVNVRSSN ENQNSPISSH ETKIEFDFFK DNNNDHHQVV SASVPDNDHI  60
HTDTSSLLEL KLSLGPNPVT TNTSSDQSMM DDGMSPNSED KRTKRELAIL QGELKQTKME  120
NCRLKLMYDQ LKTDYNNMRM HNKKVMQDRK VKEVKGKEAI DGKFKEKKRI ENGGLLEPRK  180
FMDLGSTTNK VKEVKGQDVS DGKFELVQRQ CRDLVLINNV ETAMDHEASS SSMRKPRSKD  240
QLGSTLKSIE EASKELVLSK NEDVNVDNAE ATSTKARVTI RARSQETMIT DGCHWRKYGQ  300
KLTKRNPCPK AYYRCSMACG CPVRKQVQRC DLDRTVVITT YEGNHNHPLP ATAKEMAKTT  360
SAAAKMLLST STSSNDGQLN ANLLKRTPLP CSSSIATISA SAPFPTITLD YTQSSNTPQR  420
NPNQFQTPLT CQNFSNSSSS LVSQTPNQNQ SKFSGLPMSK VAAVPSKLLA VPHIAQAVNA  480
AIAANPNFPA TLSATLTSKI GDTQPNNTVV AADNNNGNNV TKVITMEIPQ VAPTMMGRNK  540
IRNINYKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-18280351878Probable WRKY transcription factor 4
2lex_A1e-18280351878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g049760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636300.10.0WRKY transcription factor 42
TrEMBLA0A072UIW30.0A0A072UIW3_MEDTR; WRKY1b transcription factor
STRINGAES880860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-74WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]