PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g048250.1 | ||||||||
Common Name | MTR_4g048250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 130aa MW: 15079.7 Da PI: 11.5319 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.7 | 3.7e-10 | 7 | 43 | 2 | 42 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeA 42 +y+ Vr ++ +gr+vAeIrd ++ ++r++l ++t e+A Medtr4g048250.1 7 CYRVVRKRP-WGRFVAEIRDpWK----KTRVWLVAYDTDEQA 43 59*******.**********883....5**********6666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-5 | 7 | 43 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.536 | 7 | 45 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-4 | 7 | 59 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-14 | 8 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-5 | 8 | 19 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.82E-12 | 8 | 53 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-7 | 8 | 46 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.4E-5 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MAVKEICYRV VRKRPWGRFV AEIRDPWKKT RVWLVAYDTD EQATHGRASD GFRPTFVMME 60 ETDHHISRPN SAHRHVRFGR FSTWTVLGLV GWVFLVTGKI KQVVKGKKIQ NKGKKSIAKI 120 KQVTNFRTL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g048250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC229721 | 1e-140 | AC229721.9 Medicago truncatula clone mth2-80c7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7JDK1 | 4e-90 | G7JDK1_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES88133 | 7e-91 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15712 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 1e-16 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g048250.1 |
Entrez Gene | 11446927 |
Publications ? help Back to Top | |||
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