PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g047800.1
Common NameMTR_4g047800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 735aa    MW: 79912.1 Da    PI: 5.4487
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g047800.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-2061116156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Medtr4g047800.1  61 RKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 116
                      789999***********************************************999 PP
2START219.11.5e-682484691206
                      HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                      ela +a++el+ +a+ ++p+W +       + +n+de++++f+++ +     ++ ea+r+s vv+m++++lve+l+d++ qW++ +a    +a 
  Medtr4g047800.1 248 ELAVAAMEELIGMAQMGDPLWLRTTpegaaTVLNEDEYVRSFPRGIGpkpngFKCEASRESSVVIMNHVNLVEILMDVN-QWSTVFAgivsRAV 340
                      57899*******************99***9**************999********************************.************** PP

                      EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
            START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                      t+ev+s+g      galq+m+ae+q++splvp R+++fvRy++q+++g+w++vdvS+d+ ++ p    + R++++pSg+li++++ng+skvtwv
  Medtr4g047800.1 341 TVEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHPDGTWAVVDVSLDNLRPSP----SSRCRRRPSGCLIQEMPNGYSKVTWV 430
                      **************************************************************99....59************************ PP

                      E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ehv++++r +h+l+++lv++g a+gak+wvatl+rqce+
  Medtr4g047800.1 431 EHVEVDERGVHNLYKQLVNTGDAFGAKRWVATLDRQCER 469
                      *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-2242116IPR009057Homeodomain-like
SuperFamilySSF466891.34E-1952118IPR009057Homeodomain-like
PROSITE profilePS5007117.11958118IPR001356Homeobox domain
SMARTSM003899.5E-2059122IPR001356Homeobox domain
CDDcd000862.52E-1960119No hitNo description
PfamPF000465.3E-1861116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084844.28239472IPR002913START domain
SuperFamilySSF559611.18E-35239471No hitNo description
CDDcd088753.27E-128243468No hitNo description
SMARTSM002345.3E-63248469IPR002913START domain
PfamPF018524.0E-58249469IPR002913START domain
Gene3DG3DSA:3.30.530.206.3E-6342437IPR023393START-like domain
SuperFamilySSF559616.72E-25488726No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MFQSNLLEAG QFHPLEMMQN TSESDVPRIR EDEFESGTKS CSENHEGGAA SGEEQGPRPK  60
RKRYHRHTQH QIQEMESFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKTQHE  120
RSENSQLRAD NEKLRADNMR YREALSNASC PNCGGPTAIG EMSFDEHHLR LENARLREEI  180
DRISTMAAKY VGKPVVNYSN ISPSLPPRTE IGFGNPQGIG TMDMYGASGD ILRSISGPTE  240
ADKPIIIELA VAAMEELIGM AQMGDPLWLR TTPEGAATVL NEDEYVRSFP RGIGPKPNGF  300
KCEASRESSV VIMNHVNLVE ILMDVNQWST VFAGIVSRAV TVEVLSTGVA GNYNGALQVM  360
TAEFQVPSPL VPTRESYFVR YCKQHPDGTW AVVDVSLDNL RPSPSSRCRR RPSGCLIQEM  420
PNGYSKVTWV EHVEVDERGV HNLYKQLVNT GDAFGAKRWV ATLDRQCERL ASSMATNIPT  480
VDVGVITNQE GRKSMLKLAE RMVISFCGGV SASTAHTWTT LSGTGADDVR VMTRKSVDDP  540
GRPPGIVLSA ATSFWLPVPP TQVFEFLRNE NSRTEWDILS NGGVVQEMAH IANGRDTGNC  600
VSLLRVNSPN SSQSNMLILQ ESVTDATGSF VIYAPVDMVA MNVVLNGGDP DYVALLPSGF  660
AILSDGNGNG VGGETGGGVG AGAGGGGSLL TVAFQILVDS TPTAKLSLGS VATVNSLIAC  720
TVERIKASLS GESA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g047800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605900.10.0homeobox-leucine zipper protein HDG2
RefseqXP_024637466.10.0homeobox-leucine zipper protein HDG2
RefseqXP_024637467.10.0homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLG7JVZ20.0G7JVZ2_MEDTR; Homeobox leucine zipper protein
STRINGAES880970.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]