PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g047580.1
Common NameMTR_4g047580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 541aa    MW: 60081.4 Da    PI: 7.969
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g047580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY635.3e-20281337257
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                       Dg++WrK+GqK  kg+++p++ YrC+++ gC+ +k+v+r+a d +v ++tYe++ n
  Medtr4g047580.1 281 TDGCEWRKFGQKLSKGNPCPKACYRCSTSrGCSIQKQVQRCALDRTVAITTYEENRN 337
                      7*************************9988***********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-22266339IPR003657WRKY domain
SuperFamilySSF1182909.94E-18274341IPR003657WRKY domain
PROSITE profilePS5081123.812275341IPR003657WRKY domain
SMARTSM007741.0E-14280340IPR003657WRKY domain
PfamPF031062.1E-16282334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MDATHSTIPF QVSSNENQTF QISSHETRIE FDFFKDNNND HHHVETQVDD HIHTDTPSLL  60
ELKMSIGPNP VTTNTSSDQS LMDDDMPPNL EDKKFKREMA IIQGKIERKK MENCRLKMMY  120
DELRTDYNYM QMRFEKMMQD HNVKEVTGKE VFDGNFKEKK RTENGGVMGP MKFMDLGLAS  180
NKVKEVKGKE VFDGKFGDKK RMKNDGELVK RKYVDAGLDT NKVKEVFNGK CEKKKRTENG  240
GELVQRQFLS KNEIVNVDNA EATLTKTRVT IRARSEETMI TDGCEWRKFG QKLSKGNPCP  300
KACYRCSTSR GCSIQKQVQR CALDRTVAIT TYEENRNLPL PAAAKEMVQT TSAAAKMLLS  360
ASTSSNDGQL NANLLTRTPL PCSSSIATIS ASAPFPTITI DYTQSPNTPQ RNPYQFQTPL  420
ITHSSANSST SLIPQIPNQN QSKFSGLQMS NDAAGASQLL AIPNIVQIVN AAIAANPNFP  480
ADLLAALTSI IGYNRLNNIA ADNHDDNHVT EGNNNGSNNN VAEDNRNGNI TGSSNNDGKK  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-15271342878Probable WRKY transcription factor 4
2lex_A2e-15271342878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g047580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636287.10.0probable WRKY transcription factor 31
TrEMBLG7JVY10.0G7JVY1_MEDTR; WRKY1b transcription factor
STRINGAES880860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-73WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]