PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g035430.1 | ||||||||
Common Name | MTR_4g035430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 25124.7 Da PI: 5.3697 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.5e-16 | 30 | 80 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GVr ++ +gr+v+eIr p g+++r++lg+f +ae+Aa+a++ a+ l+g Medtr4g035430.1 30 SVFHGVRKRS-WGRYVSEIRLP---GQKTRIWLGSFESAEMAARAYDSAAFFLKG 80 6799***888.**********8...557***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-9 | 30 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-19 | 30 | 89 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.26E-27 | 30 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-28 | 31 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.271 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-30 | 31 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-8 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-8 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSITKESESQ SQAEARPGSI TKRSSRKGDS VFHGVRKRSW GRYVSEIRLP GQKTRIWLGS 60 FESAEMAARA YDSAAFFLKG NSASLNFPEE VEFLPRPLSS SRRDIQSAAS KAAHQRSHHH 120 QQQEEQLRGV TPSSSSSTRM NENNIINNSD DNIISGNNNV NDFSIEMMEW WKEEECVSTT 180 SFWDVEDAPL MSPTRVGSIF GDMMTWNEVF NFNDDNSLVY VP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 32 | 91 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-15 | 32 | 90 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.12074 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g035430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145289 | 0.0 | AC145289.62 Medicago truncatula clone mth2-7g18, complete sequence. | |||
GenBank | AC160842 | 0.0 | AC160842.52 Medicago truncatula clone mth2-27a2, complete sequence. | |||
GenBank | AC225544 | 0.0 | AC225544.5 Medicago truncatula clone mth2-75e9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003605655.2 | 1e-164 | ethylene-responsive transcription factor ERF038 | ||||
TrEMBL | A0A396I4Q3 | 1e-162 | A0A396I4Q3_MEDTR; Putative transcription factor AP2-EREBP family | ||||
TrEMBL | G7JRD3 | 1e-163 | G7JRD3_MEDTR; DNA-binding domain protein | ||||
STRING | AES87852 | 1e-158 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13756 | 16 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 2e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g035430.1 |
Entrez Gene | 11432913 |
Publications ? help Back to Top | |||
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