PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g028800.1 | ||||||||
Common Name | MTR_4g028800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 74aa MW: 8297.82 Da PI: 10.4736 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.2 | 3.7e-17 | 14 | 48 | 8 | 42 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42 r++t+ kR++g++KK +ELS+LC++e++ i++++ Medtr4g028800.1 14 ARKTTYNKRQKGLFKKVYELSTLCGVEACAIVYGP 48 599******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.0E-16 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.84E-18 | 2 | 71 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.47E-24 | 4 | 68 | No hit | No description |
Pfam | PF00319 | 8.6E-17 | 13 | 48 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.32 | 15 | 47 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MPWKKVKLAF IANARKTTYN KRQKGLFKKV YELSTLCGVE ACAIVYGPYE PQPKIWPSPQ 60 GVQTVLSKIQ NNV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g028800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC202601 | 2e-47 | AC202601.24 Medicago truncatula clone mth2-91e16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003605525.1 | 6e-32 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q7XJK5 | 6e-21 | AGL90_ARATH; Agamous-like MADS-box protein AGL90 | ||||
TrEMBL | A0A072UHG6 | 3e-46 | A0A072UHG6_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES87722 | 2e-31 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 5e-24 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g028800.1 |
Entrez Gene | 25491700 |
Publications ? help Back to Top | |||
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