PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g022370.1 | ||||||||
Common Name | MTR_4g022370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | Dof | ||||||||
Protein Properties | Length: 365aa MW: 39343.3 Da PI: 9.609 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.6 | 1.3e-38 | 79 | 138 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg r+nk+ss Medtr4g022370.1 79 ETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSS 138 7789*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 62 | 127 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-32 | 81 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.245 | 82 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 84 | 120 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MVFTSIPAAY LDAANWQQQQ QNHHQQPGNG GSVSQQLLQT QTPPPQQSQS QPHGGGSTGS 60 IRPGSMSDRA RMANMPMPET ALKCPRCEST NTKFCYFNNY SLSQPRHFCK TCRRYWTRGG 120 ALRNVPVGGG FRRNKRSSKS SNNGNSTKSP ASSDRQTGSA SSTNSITSNN NIHSSADILG 180 LTPQMSSLRF MTPLHHNFSN PNDFVGGGDL GLNYGFSYMG GVGDLGSALG GNSILSSSGL 240 EQWRMPMSMT HQQHQFPFLA NLEGTNSNLY PFEGNVQNHE MITSGGYVRP KVISTSGIMT 300 QLASVKMEDS INRGFLGINT SNNNSNQGSE QFWNSAVVTG NSAANWTDHV SGFSSSSNTT 360 SNQM* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00483 | DAP | Transfer from AT5G02460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g022370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126019 | 0.0 | AC126019.16 Medicago truncatula clone mth2-22p22, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003604971.2 | 0.0 | dof zinc finger protein DOF2.4 | ||||
TrEMBL | G7JUJ4 | 0.0 | G7JUJ4_MEDTR; Dof domain zinc finger protein | ||||
STRING | AES87168 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 6e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g022370.1 |
Entrez Gene | 11419272 |
Publications ? help Back to Top | |||
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